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Compositional syntax-based phrase-level polarity annotation for German
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In: Klenner, M; Clematide, S; Petrakis, S; Luder, M (2012). Compositional syntax-based phrase-level polarity annotation for German. In: The 10th International Workshop on Treebanks and Linguistic Theories (TLT 2012), Heidelberg, 6 January 2012 - 7 January 2012, online. (2012)
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Polarity preference of verbs: What could verbs reveal about the polarity of their objects?
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In: Klenner, Manfred; Petrakis, Stefanos (2012). Polarity preference of verbs: What could verbs reveal about the polarity of their objects? In: Bouma, Gosse; Ittoo, Ashwin; Métais, Elisabeth; Wortmann, Hans. Natural Language Processing and Information Systems. 17th International Conference on Applications of Natural Language to Information Systems. Heidelberg: Springer, 35-46. (2012)
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Using semantic resources to improve a syntactic dependency parser
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In: Schneider, Gerold (2012). Using semantic resources to improve a syntactic dependency parser. In: LREC 2012 Conference Workshop "Semantic Relations II", Istanbul, Turkey, 22 May 2012 - 22 May 2012, 67-76. (2012)
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Dependency bank
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In: Lehmann, Hans Martin; Schneider, Gerold (2012). Dependency bank. In: LREC 2012 Conference Workshop "Challenges in the Management of Large Corpora", Istanbul, Turkey, 22 May 2012 - 22 May 2012, 23-28. (2012)
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Semi-automatic annotation of semantic relations in a Swiss German sign language lexicon
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In: Ebling, Sarah; Tissi, Katja; Volk, Martin (2012). Semi-automatic annotation of semantic relations in a Swiss German sign language lexicon. In: 5th Workshop on the Representation and Processing of Sign Languages: Interactions between Corpus and Lexicon, LREC 2012, Istanbul, 21 May 2012 - 27 May 2012, 31-36. (2012)
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Syllabic Intensity Variations as Quantification of Speech Rhythm: Evidence from Both L1 and L2
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In: He, Lei (2012). Syllabic Intensity Variations as Quantification of Speech Rhythm: Evidence from Both L1 and L2. In: Speech Prosody 2012, Shanghai, 22 May 2012 - 25 May 2012. s.n., 466-469. (2012)
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Extrinsic evaluation of sentence alignment systems
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In: Abdul-Rauf, Sadaf; Fishel, Mark; Lambert, Patrik; Noubours, Sandra; Sennrich, Rico (2012). Extrinsic evaluation of sentence alignment systems. In: Workshop on Creating Cross-language Resources for Disconnected Languages and Styles, Istanbul, 27 May 2012 - 27 May 2012, 6-10. (2012)
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Legislative drafting guidelines: How different are they from controlled language rules for technical writing?
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In: Höfler, Stefan (2012). Legislative drafting guidelines: How different are they from controlled language rules for technical writing? In: Kuhn, Tobias; Fuchs, Norbert E. Controlled Natural Language - Third International Workshop, CNL 2012. Berlin Heidelberg: Springer Verlag, 138-151. (2012)
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Towards a Wikipedia-extracted alpine corpus
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In: Plamada, Magdalena; Volk, Martin (2012). Towards a Wikipedia-extracted alpine corpus. In: The Fifth Workshop on Building and Using Comparable Corpora, Istanbul, Turkey, 26 May 2012 - 26 May 2012. (2012)
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From drafting guideline to error detection: Automating style checking for legislative texts
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In: Höfler, Stefan; Sugisaki, Kyoko (2012). From drafting guideline to error detection: Automating style checking for legislative texts. In: EACL 2012 Workshop on Computational Linguistics and Writing, Avignon, France, 23 April 2012 - 23 April 2012, 9-18. (2012)
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The OntoGene system: an advanced information extraction application for biological literature
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In: Rinaldi, Fabio (2012). The OntoGene system: an advanced information extraction application for biological literature. EMBnet Journal, 18(Suppl B):47-49. (2012)
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Controlling ambiguities in legislative language
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In: Bünzli, Alexandra; Höfler, Stefan (2012). Controlling ambiguities in legislative language. In: Rosner, Mike; Fuchs, Norbert E. Controlled Natural Language - Second International Workshop, CNL 2010. Berlin: Springer, 21-42. (2012)
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Terra: a collection of translation error-annotated corpora
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In: Fishel, Mark; Bojar, Ondřej; Popovic, Maja (2012). Terra: a collection of translation error-annotated corpora. In: The 8th international conference on Language Resources and Evaluation (LREC), Istanbul, Turkey, 21 May 2012 - 27 May 2012, 7-14. (2012)
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Proceedings of the EACL 2012 Workshop on Computational Linguistics and Writing: Linguistic and cognitive aspects of document creation and document engineering (CL&W 2012)
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In: Proceedings of the EACL 2012 Workshop on Computational Linguistics and Writing: Linguistic and cognitive aspects of document creation and document engineering (CL&W 2012). Edited by: Piotrowski, Michael; Mahlow, Cerstin; Dale, Robert (2012). Stroudsburg, PA, USA: ACL. (2012)
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Using parallel treebanks for machine translation evaluation
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In: Plamada, Magdalena; Volk, Martin (2012). Using parallel treebanks for machine translation evaluation. In: The 11th International Workshop on Treebanks and Linguistic Theories, Lisbon, Portugal, 30 November 2012 - 1 December 2012, 145-156. (2012)
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«Ein Artikel – eine Norm». Redaktionelle Überlegungen zur Diskursstruktur von Gesetzesartikeln
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In: Höfler, Stefan (2012). «Ein Artikel – eine Norm». Redaktionelle Überlegungen zur Diskursstruktur von Gesetzesartikeln. LeGes: Gesetzgebung & Evaluation, 23(3):311-335. (2012)
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Ranking of CTD articles and interactions using the OntoGene pipeline
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In: Rinaldi, Fabio; Clematide, Simon; Hafner, Simon (2012). Ranking of CTD articles and interactions using the OntoGene pipeline. In: 2012 {BioCreative} workshop, Washington D.C., 4 April 2012 - 5 April 2012. (2012)
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Using ODIN for a PharmGKB re-validation experiment
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In: Rinaldi, Fabio; Clematide, Simon; Garten, Yael; Whirl-Carrillo, Michelle; Gong, Li; Hebert, Joan M; Sangkuhl, Katrin; Thorn, Caroline F; Klein, Teri E; Altman, Russ B (2012). Using ODIN for a PharmGKB re-validation experiment. Database: The Journal Of Biological Databases And Curation, 2012:bas021. (2012)
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Relation Mining Experiments in the Pharmacogenomics Domain
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In: Rinaldi, Fabio; Schneider, Gerold; Clematide, Simon (2012). Relation Mining Experiments in the Pharmacogenomics Domain. Journal of Biomedical Informatics, 45(5):851-861. (2012)
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Abstract:
The mutual interactions among genes, diseases, and drugs are at the heart of biomedical research, and are especially important for the pharmacological industry. The recent trend towards personalized medicine makes it increasingly relevant to be able to tailor drugs to specific genetic makeups. The pharmacogenetics and pharmacogenomics knowledge base (PharmGKB) aims at capturing relevant information about such interactions from several sources, including curation of the biomedical literature. Advanced text mining tools which can support the process of manual curation are increasingly necessary in order to cope with the deluge of new published results. However, effective evaluation of those tools requires the availability of manually curated data as gold standard. In this paper we discuss how the existing PharmGKB database can be used for such an evaluation task in a way similar to the usage of gold standard data derived from protein-protein interaction databases in one of the recent BioCreative shared tasks. Additionally, we present our own considerations and results on the feasibility and difficulty of such a task.
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Keyword:
000 Computer science; 410 Linguistics; Institute of Computational Linguistics; knowledge & systems
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URL: https://doi.org/10.1016/j.jbi.2012.04.014 https://www.zora.uzh.ch/id/eprint/62070/1/og-pharmgkb5.pdf https://www.zora.uzh.ch/id/eprint/62070/ https://doi.org/10.5167/uzh-62070
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„Ich als Linguist“ – Eine empirische Studie zur Einschätzung und Verwendung des generischen Maskulinums
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In: Schröter, Juliane; Linke, Angelika; Bubenhofer, Noah (2012). „Ich als Linguist“ – Eine empirische Studie zur Einschätzung und Verwendung des generischen Maskulinums. In: Günthner, Susanne; Hüpper, Dagmar; Spieß, Constanze. Genderlinguistik: Sprachliche Konstruktionen von Geschlechtsidentität. Berlin: Walter de Gruyter GmbH, 359-380. (2012)
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