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All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year Sort by creator [A → Z]' creator [Z → A]' publishing year ↑ (asc)' publishing year ↓ (desc)' title [A → Z]' title [Z → A]' Simple Search Page: 1 2 Hits 1 – 20 of 39 1 A Context-Driven Subgraph Model for Literature-Based Discovery Cameron, Delroy H. In: Kno.e.sis Publications (2014) BASE Show details 2 iExplore: Interactive Browsing and Exploring Biomedical Knowledge Nguyen, Vinh; Bodenreider, Olivier; Srinivasan, Jagannathan... In: Amit P. Sheth (2014) BASE Show details 3 FACES: Diversity-Aware Entity Summarization using Incremental Hierarchical Conceptual Clustering Gunaratna, Kalpa; Thirunarayan, Krishnaprasad; Sheth, Amit P. In: Amit P. Sheth (2014) BASE Show details 4 A Graph-Based Recovery and Decomposition of Swanson’s Hypothesis using Semantic Predications Cameron, Delroy H.; Bodenreider, Olivier; Yalamanchili, Himi... In: Krishnaprasad Thirunarayan (2014) BASE Show details 5 Show Me What You Mean! Exploiting Domain Semantics in Ontology Visualization Pavagada, Ravi; Thomas, Christopher; Sheth, Amit P.... In: Amit P. Sheth (2014) BASE Show details 6 Semantics-Based Information Brokering Kashyap, Vipul; Sheth, Amit P. In: Amit P. Sheth (2014) BASE Show details 7 Semantics for the Semantic Web: The Implicit, the Formal and the Powerful Sheth, Amit P.; Ramakrishnan, Cartic; Thomas, Christopher In: Amit P. Sheth (2014) BASE Show details 8 Context-Driven Automatic Subgraph Creation for Literature-Based Discovery Cameron, Delroy H.; Kavuluru, Ramakanth; Rindflesch, Thomas; Sheth, Amit P.; Thirunarayan, Krishnaprasad; Bodenreider, Olivier In: Amit P. Sheth (2014) Abstract: Background: Literature-based discovery (LBD) is characterized by uncovering hidden associations in non-interacting scientific literature. Prior approaches to LBD include use of: 1) domain expertise and structured background knowledge to manually filter and explore the literature, 2) distributional statistics and graph-theoretic measures to rank interesting connections and 3) heuristics to help eliminate spurious connections. However, manual approaches to LBD are not scalable and purely distributional approaches may not be sufficient to obtain insights into the meaning of poorly understood associations. While several graph-based approaches have the potential to elucidate associations, their effectiveness has not been fully demonstrated. A considerable degree of a prior knowledge, heuristics and manual filtering is still required. Objectives: In this paper we implement and evaluate a context-driven, automatic subgraph creation method that captures multifaceted complex associations between biomedical concepts for LBD. Given a pair of concepts, our method automatically generates a ranked list of subgraphs, which provide informative and potentially unknown associations between such concepts. Methods: To generate subgraphs, the set of all MEDLINE articles that contain either of two specified concepts (A, C) are first collected. Binary relationships or assertions, which are automatically extracted from the MEDLINE articles, called semantic predications, are then used to create a labeled directed predications graph. In this graph, a path is represented as a sequence of semantic predications. The hierarchical agglomerative clustering (HAC) algorithm is then applied to cluster paths, which are bounded by the two concepts (A, C) based on the definition of the context of a path, as a set of Medical Subject Heading (MeSH) descriptors. Paths that exceed a threshold of semantic relatedness are clustered into subgraphs based on their shared context. The automatically generated clusters are then provided as a ranked list of subgraphs. Results: The subgraphs generated using this approach facilitated the rediscovery of 8 out of 9 existing scientific discoveries. In particular, they directly (or indirectly) led to the recovery of several intermediates (or B-concepts) between A and C, while also providing insights into the meaning of each association. Such meaning is derived from predicates between the concepts, as well as the provenance of the semantic predications in MEDLINE. Additionally, by generating subgraphs on different thematic dimensions (such as Cellular Activity, Pharmaceutical Treatment and Tissue Function), the approach enables a broader understanding of the nature of complex associations between concepts in a domain. In a statistical evaluation to determine the interestingness of the subgraphs, it was observed that an arbitrary association is mentioned in only approximately 4 articles in MEDLINE on average. Conclusion: These results suggest that leveraging the implicit and explicit context provided by manually assigned MeSH descriptors is an effective representation for capturing the underlying semantics of complex associations, along multiple thematic dimensions for LBD. Keyword: Bioinformatics; Communication; Communication Technology and New Media; Computer Science and Engineering; Computer Sciences; Databases and Information Systems; Graph Mining; Hierarchical Agglomerative Clustering; Life Sciences; Literature-Based Discovery (LBD); Medical Subject Headings (MeSH); MEDLINE; OS and Networks; Path Clustering; Physical Sciences and Mathematics; Science and Technology Studies; Semantic Relatedness; Social and Behavioral Sciences URL: https://works.bepress.com/amit_sheth/381 BASE Hide details 9 SWETO: Large-Scale Semantic Web Test-bed Aleman-Meza, Boanerges; Halaschek, Chris; Sheth, Amit P.... In: Amit P. Sheth (2014) BASE Show details 10 Identifying Seekers and Suppliers in Social Media Communities to Support Crisis Coordination Purohit, Hemant; Hampton, Andrew; Bhatt, Shreyansh... In: Amit P. Sheth (2014) BASE Show details 11 Updating Relational Views Using Knowledge at View Definition and View Update Time Larson, James A.; Sheth, Amit P. In: Amit P. Sheth (2014) BASE Show details 12 Semantic Visualization: Interfaces for Exploring and Exploiting Ontology, Knowledgebase, Heterogeneous Content and Complex Relationships Sheth, Amit P.; Avant, David In: Amit P. Sheth (2014) BASE Show details 13 What Kind of #Conversation is Twitter? Mining #Psycholinguistic Cues for Emergency Coordination Purohit, Hemant; Shalin, Valerie L.; Flach, John M.... In: Amit P. Sheth (2014) BASE Show details 14 FACES: Diversity-Aware Entity Summarization using Incremental Hierarchical Conceptual Clustering Gunaratna, Kalpa; Thirunarayan, Krishnaprasad; Sheth, Amit P. In: Krishnaprasad Thirunarayan (2014) BASE Show details 15 Identifying Seekers and Suppliers in Social Media Communities to Support Crisis Coordination Purohit, Hemant; Hampton, Andrew; Bhatt, Shreyansh... In: Kno.e.sis Publications (2014) BASE Show details 16 ρ-Queries: Enabling Querying for Semantic Associations on the Semantic Web Anyanwu, Kemafor; Sheth, Amit P. In: Amit P. Sheth (2014) BASE Show details 17 Online Information Searching for Cardiovascular Diseases: An Analysis of Mayo Clinic Search Query Logs Jadhav, Ashutosh Sopan; Sheth, Amit P.; Pathak, Jyotishman In: Kno.e.sis Publications (2014) BASE Show details 18 Comparative Analysis of Online Health Queries Originating from Personal Computers and Smart Devices on a Consumer Health Information Portal Andrews, Donna; Jadhav, Ashutosh Sopan; Pathak, Jyotishman... In: Amit P. Sheth (2014) BASE Show details 19 Expressive Extensions to Inheritance Networks Thirunarayan, Krishnaprasad In: Krishnaprasad Thirunarayan (2014) BASE Show details 20 Visualization of Events in a Spatially and Multimedia Enriched Virtual Environment Deligiannidis, Leonidas; Hakimpour, Farshad; Sheth, Amit P. In: Amit P. Sheth (2014) BASE Show details Page: 1 2

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