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ImproteK: introducing scenarios into human-computer music improvisation
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In: ACM Computers in Entertainment ; https://hal.archives-ouvertes.fr/hal-01380163 ; ACM Computers in Entertainment, 2017, ⟨10.1145/3022635⟩ (2017)
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Pyannote.metrics: a toolkit for reproducible evaluation, diagnostic, and error analysis of speaker diarization systems
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In: Annual Conference of the International Speech Communication Association ; https://hal.archives-ouvertes.fr/hal-01836450 ; Annual Conference of the International Speech Communication Association , Aug 2017, Stockholm, Sweden (2017)
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Interactive Tools and Tasks for the Hebrew Bible ; Interactive Tools and Tasks for the Hebrew Bible: From Language Learning to Textual Criticism
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In: EISSN: 2416-5999 ; Journal of Data Mining and Digital Humanities ; https://hal.archives-ouvertes.fr/hal-01287195 ; Journal of Data Mining and Digital Humanities, Episciences.org, 2017, Special Issue on Computer-Aided Processing of Intertextuality in Ancient Languages (2017)
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An empirical study on the interplay between semantic coupling and co-change of software classes
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The Disciple: A Talking Platformer
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In: Senior Projects Spring 2017 (2017)
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Challenges in the Computational Implementation of Montagovian Lexical Semantics
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In: New Frontiers in Artificial Intelligence: JSAI-isAI 2016 Workshops Revised Selected Papers ; https://hal.inria.fr/hal-01559219 ; New Frontiers in Artificial Intelligence: JSAI-isAI 2016 Workshops Revised Selected Papers, 14, Springer, pp.90-107, 2017, 978-3-319-61572-1. ⟨10.1007/978-3-319-61572-1_7⟩ ; http://dx.doi.org/10.1007/978-3-319-61572-1_7 (2017)
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Towards a REST Cloud Computing Lexicon
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In: Proceedings of the 7th International Conference on Cloud Computing and Services Science ; 7th International Conference on Cloud Computing and Services Science, CLOSER 2017 ; https://hal.archives-ouvertes.fr/hal-01480593 ; 7th International Conference on Cloud Computing and Services Science, CLOSER 2017, INSTICC, Apr 2017, Porto, Portugal. pp.376--383, ⟨10.5220/0006281203760383⟩ ; http://closer.scitevents.org/?y=2017 (2017)
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Синергия гуманитарного и математического знания как педагогическое условие решения междисциплинарных проблем
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A Formally Verified Interpreter for a Shell-like Programming Language
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In: VSTTE 2017 - 9th Working Conference on Verified Software: Theories, Tools, and Experiments ; https://hal.archives-ouvertes.fr/hal-01534747 ; VSTTE 2017 - 9th Working Conference on Verified Software: Theories, Tools, and Experiments, Jul 2017, Heidelberg, Germany (2017)
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Revisiting Visitors for Modular Extension of Executable DSMLs
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In: 2017 ACM/IEEE 20th International Conference on Model Driven Engineering Languages and Systems ; https://hal.inria.fr/hal-01568169 ; 2017 ACM/IEEE 20th International Conference on Model Driven Engineering Languages and Systems, Sep 2017, Austin, United States. ⟨10.1109/MODELS.2017.23⟩ (2017)
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Semantic-Directed Clumping of Disjunctive Abstract States *
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In: POPL 2017 - 44th ACM SIGPLAN Symposium on Principles of Programming Languages ; https://hal.inria.fr/hal-01648679 ; POPL 2017 - 44th ACM SIGPLAN Symposium on Principles of Programming Languages, Jan 2017, Paris, France. pp.32-45, ⟨10.1145/3009837.3009881⟩ (2017)
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On Language Interfaces
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In: PAUSE: Present And Ulterior Software Engineering ; https://hal.inria.fr/hal-01424909 ; Bertrand Meyer; Manuel Mazzara. PAUSE: Present And Ulterior Software Engineering, Springer, 2017 (2017)
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Practical Subtyping for System F with Sized (Co-)Induction
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In: https://hal.archives-ouvertes.fr/hal-01289760 ; 2017 (2017)
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AD-LIBS: inferring ancestry across hybrid genomes using low-coverage sequence data.
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In: BMC bioinformatics, vol 18, iss 1 (2017)
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Abstract:
BackgroundInferring the ancestry of each region of admixed individuals' genomes is useful in studies ranging from disease gene mapping to speciation genetics. Current methods require high-coverage genotype data and phased reference panels, and are therefore inappropriate for many data sets. We present a software application, AD-LIBS, that uses a hidden Markov model to infer ancestry across hybrid genomes without requiring variant calling or phasing. This approach is useful for non-model organisms and in cases of low-coverage data, such as ancient DNA.ResultsWe demonstrate the utility of AD-LIBS with synthetic data. We then use AD-LIBS to infer ancestry in two published data sets: European human genomes with Neanderthal ancestry and brown bear genomes with polar bear ancestry. AD-LIBS correctly infers 87-91% of ancestry in simulations and produces ancestry maps that agree with published results and global ancestry estimates in humans. In brown bears, we find more polar bear ancestry than has been published previously, using both AD-LIBS and an existing software application for local ancestry inference, HAPMIX. We validate AD-LIBS polar bear ancestry maps by recovering a geographic signal within bears that mirrors what is seen in SNP data. Finally, we demonstrate that AD-LIBS is more effective than HAPMIX at inferring ancestry when preexisting phased reference data are unavailable and genomes are sequenced to low coverage.ConclusionsAD-LIBS is an effective tool for ancestry inference that can be used even when few individuals are available for comparison or when genomes are sequenced to low coverage. AD-LIBS is therefore likely to be useful in studies of non-model or ancient organisms that lack large amounts of genomic DNA. AD-LIBS can therefore expand the range of studies in which admixture mapping is a viable tool.
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Keyword:
Admixture; Ancestry; Animals; Bears; Bioinformatics; Biological Sciences; Genetic; Genetic Speciation; Genetics; Genome; Human Genome; Humans; Hybridization; Information and Computing Sciences; Markov Chains; Mathematical Sciences; Polymorphism; Single Nucleotide; Software; Speciation; Ursidae
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URL: https://escholarship.org/uc/item/04j576r0
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Real-Time Systems Development Exploiting Aspect-Oriented Approach ; Développement de Systèmes Temps Réels Exploitant l'Approche Orientée Aspects
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In: https://hal.archives-ouvertes.fr/tel-01543395 ; Génie logiciel [cs.SE]. Faculté des Sciences de Tunis, 2017. Français (2017)
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Dependent Event Types
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In: Logic, Language, Information, and Computation ; 24th International Workshop Logic, Language, Information, and Computation (WoLLIC 2017) ; https://hal.archives-ouvertes.fr/hal-01913662 ; 24th International Workshop Logic, Language, Information, and Computation (WoLLIC 2017), Jul 2017, London, United Kingdom. pp. 216-228 (2017)
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Projet ModRef : Migration de Données vers des Triplestores CIDOC-CRM
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In: 35e édition du Congrès National Inforsid ; https://hal.archives-ouvertes.fr/hal-01579337 ; 35e édition du Congrès National Inforsid, May 2017, Toulouse, France ; http://inforsid.fr/Toulouse2017/dates-appels/ (2017)
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ModRef Project: from Creation to Exploitation of CIDOC-CRM Triplestores ; Projet ModRef :de la Création à l'Exploitation de Triplestores CIDOC-CRM
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In: The Fifth International Conference on Building and Exploring Web Based Environments (WEB 2017) ; https://hal.archives-ouvertes.fr/hal-01578878 ; The Fifth International Conference on Building and Exploring Web Based Environments (WEB 2017) , May 2017, Barcelona, Spain ; http://www.iaria.org/conferences2017/WEB17.html (2017)
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The narrative effects of classical music in palliative care ; Les effets narratifs de la musique classique dans les soins palliatifs
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In: ISSN: 1778-3798 ; EISSN: 1778-381X ; Psycho-Oncologie ; https://hal.archives-ouvertes.fr/hal-01792126 ; Psycho-Oncologie, Springer, 2017, 11 (4), pp.243-251. ⟨10.1007/s11839-017-0637-7⟩ (2017)
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