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Hits 1 – 2 of 2
1
Occurrence table after data filtering for Ion PGM and MiSeq sequencing ...
Forin-Wiart, Marie-Amélie
;
Poulle, Marie-Lazarine
;
Piry, Sylvain
. - : Dryad Digital Repository, 2018
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2
Abundance table before data filtering for Ion PGM and MiSeq sequencing ...
Forin-Wiart, Marie-Amélie
;
Poulle, Marie-Lazarine
;
Piry, Sylvain
;
Cosson, Jean-François
;
Larose, Claire
;
Galan, Maxime
. - : Dryad Digital Repository, 2018
Abstract:
This TXT file contains the number of reads for each distinct taxonomic affiliation obtains with the SESAME barcode software using the variant sequences of the Ion PGM and MiSeq runs, and for each sample replicate before data filtering. The thresholds TFA described in the article are provided in the columns C to H. Each sample is described by 12 columns: 6 concern the Ion PGM results (suffix “_I”) and 6 concern the MiSeq results (suffix “_M”). For each sequencing platform, the taxonomic affiliation results of the two PCR replicates are provided for three similarity thresholds: 95%, 98% and 100%. The column “type” indicates the putative origin of the food using the taxonomic identification: prey (Pr) or human-related food (Hf). ...
Keyword:
cytb
;
Felis domesticus
;
France
;
HTS data filtering
;
MiSeq sequencing
;
non-invasive approach
;
sequencer bias
;
variability in DNA degradation
URL:
https://dx.doi.org/10.5061/dryad.cs6sj2g/5
https://datadryad.org/resource/doi:10.5061/dryad.cs6sj2g/5
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