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All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year Sort by creator [A → Z]' creator [Z → A]' publishing year ↑ (asc)' publishing year ↓ (desc)' title [A → Z]' title [Z → A]' Simple Search Page: 1 2 3 4 Hits 21 – 40 of 63 21 Assisted curation of growth conditions that affect gene expression in E. coli K-12 Gama, Socorro -Castro; Rinaldi, Fabio In: Gama, Socorro -Castro; Rinaldi, Fabio; et al (2013). Assisted curation of growth conditions that affect gene expression in E. coli K-12. In: Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, Bethesda, MD, US, 7 October 2013 - 9 October 2013, 214-218. (2013) BASE Show details 22 PyBioC: a python implementation of the BioC core Marques, Hernani; Rinaldi, Fabio In: Marques, Hernani; Rinaldi, Fabio (2013). PyBioC: a python implementation of the BioC core. In: Fourth BioCreative Challenge Evaluation Workshop, Bethesda, MD, US, 7 October 2013 - 9 October 2013, 2-4. (2013) BASE Show details 23 OntoGene: CTD entity and action term recognition Rinaldi, Fabio; Clematide, Simon; Ellendorff, Tilia Renate... In: Rinaldi, Fabio; Clematide, Simon; Ellendorff, Tilia Renate; Marques, Hernani (2013). OntoGene: CTD entity and action term recognition. In: Fourth BioCreative Challenge Evaluation Workshop, Bethesda, MD, US, 7 October 2013 - 9 October 2013, 90-94. (2013) BASE Show details 24 The OntoGene literature mining web service Rinaldi, Fabio In: Rinaldi, Fabio (2013). The OntoGene literature mining web service. EMBnet Journal, 19(Suppl B):32-35. (2013) BASE Show details 25 The OntoGene system: an advanced information extraction application for biological literature Rinaldi, Fabio In: Rinaldi, Fabio (2012). The OntoGene system: an advanced information extraction application for biological literature. EMBnet Journal, 18(Suppl B):47-49. (2012) BASE Show details 26 Ranking of CTD articles and interactions using the OntoGene pipeline Rinaldi, Fabio; Clematide, Simon; Hafner, Simon In: Rinaldi, Fabio; Clematide, Simon; Hafner, Simon (2012). Ranking of CTD articles and interactions using the OntoGene pipeline. In: 2012 {BioCreative} workshop, Washington D.C., 4 April 2012 - 5 April 2012. (2012) BASE Show details 27 Using ODIN for a PharmGKB re-validation experiment Rinaldi, Fabio; Clematide, Simon; Garten, Yael... In: Rinaldi, Fabio; Clematide, Simon; Garten, Yael; Whirl-Carrillo, Michelle; Gong, Li; Hebert, Joan M; Sangkuhl, Katrin; Thorn, Caroline F; Klein, Teri E; Altman, Russ B (2012). Using ODIN for a PharmGKB re-validation experiment. Database: The Journal Of Biological Databases And Curation, 2012:bas021. (2012) BASE Show details 28 Relation Mining Experiments in the Pharmacogenomics Domain Rinaldi, Fabio; Schneider, Gerold; Clematide, Simon In: Rinaldi, Fabio; Schneider, Gerold; Clematide, Simon (2012). Relation Mining Experiments in the Pharmacogenomics Domain. Journal of Biomedical Informatics, 45(5):851-861. (2012) BASE Show details 29 A data-driven approach to alternations based on protein-protein interactions Schneider, Gerold; Rinaldi, Fabio In: Schneider, Gerold; Rinaldi, Fabio (2011). A data-driven approach to alternations based on protein-protein interactions. In: III Congreso Internacional de Lingüística de Corpus, Valencia, Spain, 7 April 2011 - 9 April 2011, 597-607. (2011) BASE Show details 30 The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text Krallinger, M; Vazquez, M; Leitner, F... In: Krallinger, M; Vazquez, M; Leitner, F; Salgado, D; Chatr-aryamontri, A; Winter, A; Perfetto, L; Briganti, L; Licata, L; Iannuccelli, M; Castagnoli, L; Cesareni, G; Tyers, M; Schneider, G; Rinaldi, Fabio; Leaman, R; Gonzalez, G; Matos, S; Kim, S; Wilbur, W J; Rocha, L; Shatkay, H; Tendulkar, A V; Agarwal, S; Liu, F; Wang, X; Rak, R; Noto, K; Elkan, C; Lu, Z (2011). The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. BMC Bioinformatics, 12(Suppl 8):S3. (2011) BASE Show details 31 The gene normalization task in BioCreative III Lu, Z; Kao, H Y; Wei, C H... In: Lu, Z; Kao, H Y; Wei, C H; Huang, M; Liu, J; Kuo, C J; Hsu, C N; Tsai, R; Dai, H J; Okazaki, N; Cho, H C; Gerner, M; Solt, I; Agarwal, S; Liu, F; Vishnyakova, D; Ruch, P; Romacker, M; Rinaldi, Fabio; Bhattacharya, S; Srinivasan, P; Liu, H; Torii, M; Matos, S; Campos, D; Verspoor, K; Livingston, K; Wilbur, W (2011). The gene normalization task in BioCreative III. BMC Bioinformatics, 12(Suppl 8):S2. (2011) BASE Show details 32 Towards mature use of semantic resources for biomedical analyses Rebholz-Schuhmann, D; Rinaldi, Fabio; Pyysalo, S... In: Rebholz-Schuhmann, D; Rinaldi, Fabio; Pyysalo, S; Collier, N; Hahn, U (2011). Towards mature use of semantic resources for biomedical analyses. Journal of Biomedical Semantics, 2(Suppl 5):I1. (2011) BASE Show details 33 Assessment of NER solutions against the first and second CALBC Silver Standard Corpus Rebholz-Schuhmann, D; Jimeno, A; Li, C... In: Rebholz-Schuhmann, D; Jimeno, A; Li, C; Kafkas, S; Lewin, I; Kang, N; Corbett, P; Milward, D; Buyko, E; Beisswanger, E; Hornbostel, K; Kouznetsov, A; Witte, R; Laurila, J; Baker, C; Kuo, C; Clematide, S; Rinaldi, Fabio; Farkas, R; Móra, G; Hara, K; Furlong, L; Rautschka, M; Neves, M; Pascual-Montan, A; Wei, Q; Collier, N; Chowdhury, F; Lavelli, A; Berlanga, R; Morante, R; Van Asch, V; Daelemans, W; Marina, J; van Mulligen, E; Kors, J; Hahn, U (2011). Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. Journal of Biomedical Semantics, 2(Suppl 5):S11. (2011) BASE Show details 34 Detection of interaction articles and experimental methods in biomedical literature Schneider, Gerold; Clematide, Simon; Rinaldi, Fabio In: Schneider, Gerold; Clematide, Simon; Rinaldi, Fabio (2011). Detection of interaction articles and experimental methods in biomedical literature. BMC Bioinformatics, 12(Suppl 8):S13. (2011) BASE Show details 35 BioCreative III interactive task: an overview Arighi, C; Roberts, P; Agarwal, S... In: Arighi, C; Roberts, P; Agarwal, S; Bhattacharya, S; Cesareni, G; Chatr-aryamontri, A; Clematide, S; Gaudet, P; Giglio, M; Harrow, I; Huala, E; Krallinger, M; Leser, U; Li, D; Liu, F; Lu, Z; Maltais, L; Okazaki, N; Perfetto, L; Rinaldi, Fabio; Saetre, R; Salgado, D; Srinivasan, P; Thomas, P; Toldo, L; Hirschman, L; Wu, C (2011). BioCreative III interactive task: an overview. BMC Bioinformatics, 12(Suppl 8):S4. (2011) BASE Show details 36 Mining complex Drug/Gene/Disease relations Rinaldi, Fabio; Schneider, G; Clematide, S In: Rinaldi, Fabio; Schneider, G; Clematide, S (2011). Mining complex Drug/Gene/Disease relations. In: Pacific Symposium on Biocomputing Workshop "Mining the Pharmacogenomics Literature", Hawaii, 3 January 2011 - 7 January 2011. (2011) BASE Show details 37 OntoGene at CALBC II and Some Thoughts on the Need of Document-Wide Harmonization Clematide, S; Rinaldi, Fabio; Schneider, G In: Clematide, S; Rinaldi, Fabio; Schneider, G (2011). OntoGene at CALBC II and Some Thoughts on the Need of Document-Wide Harmonization. In: Second CALBC Workshop, Hinxton, Cambridgeshire, UK, 16 March 2011 - 18 March 2011, 48-51. (2011) BASE Show details 38 ODIN: an advanced interface for the curation of biomedical literature Rinaldi, Fabio; Clematide, S; Schneider, G... In: Rinaldi, Fabio; Clematide, S; Schneider, G; Romacker, M; Vachon, Th (2010). ODIN: an advanced interface for the curation of biomedical literature. In: Biocuration 2010, Tokyo, Japan, 11 October 2010 - 14 October 2010. (2010) BASE Show details 39 OntoGene (Team 65): preliminary analysis of participation in BioCreative III Rinaldi, Fabio; Schneider, Gerold; Clematide, Simon... In: Rinaldi, Fabio; Schneider, Gerold; Clematide, Simon; Jegen, Silvan; et al (2010). OntoGene (Team 65): preliminary analysis of participation in BioCreative III. In: BioCreative III workshop, Bethesda, Maryland, 13 September 2010 - 15 September 2010. (2010) BASE Show details 40 Detecting protein-protein interactions in biomedical texts using a parser and linguistic resources Schneider, Gerold; Kaljurand, Kaarel; Rinaldi, Fabio In: Schneider, Gerold; Kaljurand, Kaarel; Rinaldi, Fabio (2009). Detecting protein-protein interactions in biomedical texts using a parser and linguistic resources. In: Gelbukh, Alexander. Computational Linguistics and Intelligent Text Processing. Berlin: Springer, 406-417. (2009) BASE Show details Page: 1 2 3 4

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