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All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year Sort by creator [A → Z]' creator [Z → A]' publishing year ↑ (asc)' publishing year ↓ (desc)' title [A → Z]' title [Z → A]' Simple Search Page: 1 2 Hits 1 – 20 of 30 1 Measuring the Public Account- ability of New Modes of Governance Wüest, Bruno; Schneider, G; Amsler, Michael In: Wüest, Bruno; Schneider, G; Amsler, Michael (2014). Measuring the Public Account- ability of New Modes of Governance. In: ACL Workshop on Language Technology and Computational Social Science, Baltimore, Maryland, USA, 24 June 2014 - 26 June 2014. (2014) BASE Show details 2 De pájaros, astros y ángeles: una reflexión sobre los valores poetológicos del espacio supraterrenal en «Primeras poesías» de Luis Cernuda Schneider, G In: Schneider, G (2012). De pájaros, astros y ángeles: una reflexión sobre los valores poetológicos del espacio supraterrenal en «Primeras poesías» de Luis Cernuda. Boletín Hispánico Helvético : Historia, Teoría(s), Prácticas Culturales, (20):41-62. (2012) BASE Show details 3 The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text Krallinger, M; Vazquez, M; Leitner, F... In: Krallinger, M; Vazquez, M; Leitner, F; Salgado, D; Chatr-aryamontri, A; Winter, A; Perfetto, L; Briganti, L; Licata, L; Iannuccelli, M; Castagnoli, L; Cesareni, G; Tyers, M; Schneider, G; Rinaldi, Fabio; Leaman, R; Gonzalez, G; Matos, S; Kim, S; Wilbur, W J; Rocha, L; Shatkay, H; Tendulkar, A V; Agarwal, S; Liu, F; Wang, X; Rak, R; Noto, K; Elkan, C; Lu, Z (2011). The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. BMC Bioinformatics, 12(Suppl 8):S3. (2011) BASE Show details 4 Mining complex Drug/Gene/Disease relations Rinaldi, Fabio; Schneider, G; Clematide, S In: Rinaldi, Fabio; Schneider, G; Clematide, S (2011). Mining complex Drug/Gene/Disease relations. In: Pacific Symposium on Biocomputing Workshop "Mining the Pharmacogenomics Literature", Hawaii, 3 January 2011 - 7 January 2011. (2011) BASE Show details 5 OntoGene at CALBC II and Some Thoughts on the Need of Document-Wide Harmonization Clematide, S; Rinaldi, Fabio; Schneider, G In: Clematide, S; Rinaldi, Fabio; Schneider, G (2011). OntoGene at CALBC II and Some Thoughts on the Need of Document-Wide Harmonization. In: Second CALBC Workshop, Hinxton, Cambridgeshire, UK, 16 March 2011 - 18 March 2011, 48-51. (2011) BASE Show details 6 ODIN: an advanced interface for the curation of biomedical literature Rinaldi, Fabio; Clematide, S; Schneider, G; Romacker, M; Vachon, Th In: Rinaldi, Fabio; Clematide, S; Schneider, G; Romacker, M; Vachon, Th (2010). ODIN: an advanced interface for the curation of biomedical literature. In: Biocuration 2010, Tokyo, Japan, 11 October 2010 - 14 October 2010. (2010) Abstract: We present ODIN (Ontogene Document INspector): a system for interactive curation of biomedical literature, developed within the scope of the SASEBio project (Semi-Automated Semantic Enrichment of the Biomedical Literature), as a collaboration between the OntoGene group at the University of Zurich and the NITAS/TMS group of Novartis Pharma AG. The purpose of the system is to allow a human annotator/curator to leverage upon the results of an advanced text mining system in order to enhance the speed and effectiveness of the annotation process. The OntoGene system takes as input a document (e.g a full paper from PubMed Central) and processes it with a custom NLP pipeline, which includes Named Entity recognition and relation extraction. Entities which are currently supported include proteins, genes, experimental methods, cell lines, species. Entities detected in the input document are disambiguated with respect to a reference database (UniProt, EntrezGene, NCBI taxonomy, PSI-MI ontology). The annotated documents are handed back to the ODIN interface, which allows multiple display modalities. The curator/annotator can view the whole document with in-line annotations highlighted, or can browse the extracted entities and be pointed back to the mentions of the entities within the original document. All entity mentions are entirely editable: the curator can easily add or delete any of them, and also change their extent (i.e. add/remove words to its right or left) with a simple click of the mouse. Different entity views are supported, with sorting capabilities according to different criteria (entity type, entity mention, confidence score, etc.). Selective highlighting of text units (e.g. sentences containing desired entities) is supported. Additionally, extensive logging functionalities are provided. All documents and entities are fully interlinked to reference databases, for the purpose of simplified inspection. Entities can be grouped in classes (e.g. by species) and actions can be applied to whole classes, for selective editing or removal. Keyword: 000 Computer science; 410 Linguistics; Institute of Computational Linguistics; knowledge & systems URL: https://doi.org/10.1038/npre.2010.5169.1 https://www.zora.uzh.ch/id/eprint/46738/4/Rinaldi_Clematide_Schneider_2010V.pdf https://www.zora.uzh.ch/id/eprint/46738/ https://doi.org/10.5167/uzh-46738 BASE Hide details 7 A framework for constituent-dependency conversion Marek, T; Schneider, G; Volk, Martin In: Marek, T; Schneider, G; Volk, Martin (2009). A framework for constituent-dependency conversion. In: 8th Conference on Treebanks and Linguistic Theories, Milano, 2009 - 2009. (2009) BASE Show details 8 Using existing biomedical resources to detect and ground terms in biomedical literature Kaljurand, K; Rinaldi, Fabio; Kappeler, T... In: Kaljurand, K; Rinaldi, Fabio; Kappeler, T; Schneider, G (2009). Using existing biomedical resources to detect and ground terms in biomedical literature. In: Combi, C; Shahar, Y; Abu-Hanna, A. Artificial Intelligence in Medicine: 12th Conference on Artificial Intelligence in Medicine, AIME 2009, Verona, Italy, July 18-22, 2009. Proceedings. Berlin: Springer, 225-234. (2009) BASE Show details 9 Effective Mining of Protein Interactions Rinaldi, Fabio; Schneider, G; Kaljurand, K... In: Rinaldi, Fabio; Schneider, G; Kaljurand, K; Clematide, S (2009). Effective Mining of Protein Interactions. In: Third international symposium on languages in biology and medecine (LBM 2009), Jeju Island, South Korea, 8 November 2009 - 10 November 2009, 115-118. (2009) BASE Show details 10 Detecting and grounding terms in biomedical literature Kaljurand, K; Rinaldi, Fabio; Kappeler, T... In: Kaljurand, K; Rinaldi, Fabio; Kappeler, T; Schneider, G (2009). Detecting and grounding terms in biomedical literature. Advances in Computational Linguistics, 41:15-26. (2009) BASE Show details 11 OntoGene in BioCreative II Hess, M; Schneider, G; Parisot, P... In: Rinaldi, Fabio; Kappeler, T; Kaljurand, K; Schneider, G; Klenner, M; Clematide, S; Hess, M; von Allmen, J M; Parisot, P; Romacker, M; Vachon, T (2008). OntoGene in BioCreative II. Genome Biology, 9(Suppl 2):S13. (2008) BASE Show details 12 Tools for detection of protein interactions in biomedical literature Rinaldi, Fabio; Schneider, G; Kaljurand, K In: Rinaldi, Fabio; Schneider, G; Kaljurand, K (2008). Tools for detection of protein interactions in biomedical literature. In: Genomes to Systems Conference 2008, Manchester, UK, 17 March 2008 - 19 March 2008. (2008) BASE Show details 13 Extended discourse representation structures in attempto controlled English Fuchs, N E; Hoefler, S; Kaljurand, K... In: Fuchs, N E; Hoefler, S; Kaljurand, K; Kuhn, T; Schneider, G; Schwertel, U (2006). Extended discourse representation structures in attempto controlled English. ifi Technical Reports ifi2006.07, University of Zurich. (2006) BASE Show details 14 An environment for relation mining over richly annotated corpora: the case of GENIA Rinaldi, Fabio; Schneider, G; Kaljurand, K... In: Rinaldi, Fabio; Schneider, G; Kaljurand, K; Hess, M; Romacker, M (2006). An environment for relation mining over richly annotated corpora: the case of GENIA. BMC Bioinformatics, 7(Suppl 3):S3. (2006) BASE Show details 15 Discourse representation structures for ACE 5 Fuchs, N E; Hoefler, S; Kaljurand, K... In: Fuchs, N E; Hoefler, S; Kaljurand, K; Kuhn, T; Schneider, G; Schwertel, U (2006). Discourse representation structures for ACE 5. ifi Technical Reports ifi2006.10, University of Zurich. (2006) BASE Show details 16 Extended discourse representation structures in attempto controlled English Schwertel, U; Hoefler, S; Schneider, G... In: Fuchs, N E; Hoefler, S; Kaljurand, K; Schneider, G; Schwertel, U (2005). Extended discourse representation structures in attempto controlled English. ifi Technical Reports ifi-2005.8, University of Zurich. (2005) BASE Show details 17 Exploiting technical terminology for knowledge management Rinaldi, Fabio; Yuste, E; Schneider, G... In: Rinaldi, Fabio; Yuste, E; Schneider, G; Hess, M; Roussel, D (2005). Exploiting technical terminology for knowledge management. In: Ontology Learning from Text: Methods, Evaluation and Applications, Amsterdam: IOS Press (Frontiers in artificial intelligence and applications, edited by J. Breuker et al., volume 123), 2005 - 2005, 140-154. (2005) BASE Show details 18 Mining relations in the GENIA corpus Rinaldi, Fabio; Schneider, G; Kaljurand, K... In: Rinaldi, Fabio; Schneider, G; Kaljurand, K; Dowdall, J; Andronis, C; Persidis, A; Konstanti, O (2004). Mining relations in the GENIA corpus. In: Second European Workshop on Data Mining and Text Mining for Bioinformatics, Pisa, Italy, September 2004 - September 2004, 61-68. (2004) BASE Show details 19 Terminology expansion and relation identification between genes and pathways Dowdall, J; Rinaldi, Fabio; Persidis, A... In: Dowdall, J; Rinaldi, Fabio; Persidis, A; Kaljurand, K; Schneider, G; Hess, M (2004). Terminology expansion and relation identification between genes and pathways. In: Workshop on Terminology, Ontology and Knowledge Representation, Universit Jean Moulin (Lyon 3), January 2004 - January 2004, 61-68. (2004) BASE Show details 20 Answering questions in the genomics domain Rinaldi, Fabio; Dowdall, J; Schneider, G In: Rinaldi, Fabio; Dowdall, J; Schneider, G (2004). Answering questions in the genomics domain. In: ACL-2004 workshop on Question Answering in Restricted Domains, Barcelona, Spain., July 2004 - July 2004, 46-53. (2004) BASE Show details Page: 1 2

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