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All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year Sort by creator [A → Z]' creator [Z → A]' publishing year ↑ (asc)' publishing year ↓ (desc)' title [A → Z]' title [Z → A]' Simple Search Page: 1 2 Hits 1 – 20 of 25 1 ACE can be described by itself Fuchs, N E; Kaljurand, K; Kuhn, T In: Fuchs, N E; Kaljurand, K; Kuhn, T (2009). ACE can be described by itself. In: Clematide, S; Klenner, M; Volk, Martin. Searching Answers: Festschrift in honour of Michael Hess on the occasion of his 60th birthday. Münster, Germany: Monsenstein und und Vannerdat, 45-48. (2009) BASE Show details 2 Using existing biomedical resources to detect and ground terms in biomedical literature Kaljurand, K; Rinaldi, Fabio; Kappeler, T... In: Kaljurand, K; Rinaldi, Fabio; Kappeler, T; Schneider, G (2009). Using existing biomedical resources to detect and ground terms in biomedical literature. In: Combi, C; Shahar, Y; Abu-Hanna, A. Artificial Intelligence in Medicine: 12th Conference on Artificial Intelligence in Medicine, AIME 2009, Verona, Italy, July 18-22, 2009. Proceedings. Berlin: Springer, 225-234. (2009) BASE Show details 3 Controlled Natural Language for Clinical Practice Guidelines Shiffman, R N; Michel, G; Krauthammer, M... In: Shiffman, R N; Michel, G; Krauthammer, M; Fuchs, N E; Kaljurand, K; Kuhn, T (2009). Controlled Natural Language for Clinical Practice Guidelines. In: Workshop on Controlled Natural Language (CNL 2009), Marettimo, Italy, 8 June 2009 - 10 June 2009. (2009) BASE Show details 4 Paraphrasing controlled English texts Kaljurand, K In: Kaljurand, K (2009). Paraphrasing controlled English texts. In: Workshop on Controlled Natural Language (CNL 2009), Marettimo, Italy, 8 June 2009 - 10 June 2009. (2009) BASE Show details 5 Effective Mining of Protein Interactions Rinaldi, Fabio; Schneider, G; Kaljurand, K... In: Rinaldi, Fabio; Schneider, G; Kaljurand, K; Clematide, S (2009). Effective Mining of Protein Interactions. In: Third international symposium on languages in biology and medecine (LBM 2009), Jeju Island, South Korea, 8 November 2009 - 10 November 2009, 115-118. (2009) BASE Show details 6 Controlled English for Reasoning on the Semantic Web De Coi, J L; Fuchs, N E; Kaljurand, K... In: De Coi, J L; Fuchs, N E; Kaljurand, K; Kuhn, T (2009). Controlled English for Reasoning on the Semantic Web. In: Bry, F; Maluszynski, J. Semantic Techniques for the Web: The REWERSE Perspective. Berlin / Heidelberg, Germany: Springer, 276-308. (2009) BASE Show details 7 Detecting and grounding terms in biomedical literature Kaljurand, K; Rinaldi, Fabio; Kappeler, T... In: Kaljurand, K; Rinaldi, Fabio; Kappeler, T; Schneider, G (2009). Detecting and grounding terms in biomedical literature. Advances in Computational Linguistics, 41:15-26. (2009) BASE Show details 8 Writing clinical practice guidelines in controlled natural language Shiffman, R N; Michel, G; Krauthammer, M... In: Shiffman, R N; Michel, G; Krauthammer, M; Fuchs, N E; Kaljurand, K; Kuhn, T (2009). Writing clinical practice guidelines in controlled natural language. In: Workshop on Controlled Natural Language (CNL 2009), Marettimo, Italy, 8 June 2009 - 10 June 2009. Springer, 265-280. (2009) BASE Show details 9 OntoGene in BioCreative II Hess, M; Schneider, G; Parisot, P... In: Rinaldi, Fabio; Kappeler, T; Kaljurand, K; Schneider, G; Klenner, M; Clematide, S; Hess, M; von Allmen, J M; Parisot, P; Romacker, M; Vachon, T (2008). OntoGene in BioCreative II. Genome Biology, 9(Suppl 2):S13. (2008) BASE Show details 10 Tools for detection of protein interactions in biomedical literature Rinaldi, Fabio; Schneider, G; Kaljurand, K In: Rinaldi, Fabio; Schneider, G; Kaljurand, K (2008). Tools for detection of protein interactions in biomedical literature. In: Genomes to Systems Conference 2008, Manchester, UK, 17 March 2008 - 19 March 2008. (2008) BASE Show details 11 Attempto controlled English for knowledge representation Kuhn, T; Kaljurand, K; Fuchs, N E In: Fuchs, N E; Kaljurand, K; Kuhn, T (2008). Attempto controlled English for knowledge representation. In: 4th International Summer School 2008, Venice, Italy, 7 September 2008 - 11 September 2008. Springer, 104-124. (2008) BASE Show details 12 A comparison of three controlled natural languages for OWL 1.1 Schwitter, R; Kaljurand, K; Cregan, A... In: Schwitter, R; Kaljurand, K; Cregan, A; Dolbear, C; Hart, G (2008). A comparison of three controlled natural languages for OWL 1.1. In: 4th OWL Experiences and Directions Workshop (OWLED 2008 DC), Washington, USA, 1 April 2008 - 2 April 2008, 1-10. (2008) BASE Show details 13 ACE View --- an ontology and rule editor based on Attempto Controlled English Kaljurand, K In: Kaljurand, K (2008). ACE View --- an ontology and rule editor based on Attempto Controlled English. In: 5th OWL Experiences and Directions Workshop (OWLED 2008), Karlsruhe, Germany, 26 October 2008 - 27 October 2008, 1-12. (2008) BASE Show details 14 Mining of functional relations between genes and proteins over biomedical scientific literature using a deep-linguistic approach ... Rinaldi, Fabio; Schneider, G; Kaljurand, K. - : Elsevier, 2007 BASE Show details 15 Mapping Attempto Controlled English to OWL DL Kaljurand, K; Fuchs, N E In: Kaljurand, K; Fuchs, N E (2006). Mapping Attempto Controlled English to OWL DL. In: 3rd European Semantic Web Conference, Budva, Montenegro, 11 June 2006 - 2006. (2006) BASE Show details 16 Extended discourse representation structures in attempto controlled English Fuchs, N E; Hoefler, S; Kaljurand, K... In: Fuchs, N E; Hoefler, S; Kaljurand, K; Kuhn, T; Schneider, G; Schwertel, U (2006). Extended discourse representation structures in attempto controlled English. ifi Technical Reports ifi2006.07, University of Zurich. (2006) BASE Show details 17 An environment for relation mining over richly annotated corpora: the case of GENIA Rinaldi, Fabio; Schneider, G; Kaljurand, K... In: Rinaldi, Fabio; Schneider, G; Kaljurand, K; Hess, M; Romacker, M (2006). An environment for relation mining over richly annotated corpora: the case of GENIA. BMC Bioinformatics, 7(Suppl 3):S3. (2006) BASE Show details 18 Discourse representation structures for ACE 5 Fuchs, N E; Hoefler, S; Kaljurand, K... In: Fuchs, N E; Hoefler, S; Kaljurand, K; Kuhn, T; Schneider, G; Schwertel, U (2006). Discourse representation structures for ACE 5. ifi Technical Reports ifi2006.10, University of Zurich. (2006) BASE Show details 19 Extended discourse representation structures in attempto controlled English Schwertel, U; Hoefler, S; Schneider, G... In: Fuchs, N E; Hoefler, S; Kaljurand, K; Schneider, G; Schwertel, U (2005). Extended discourse representation structures in attempto controlled English. ifi Technical Reports ifi-2005.8, University of Zurich. (2005) BASE Show details 20 Mining relations in the GENIA corpus Rinaldi, Fabio; Schneider, G; Kaljurand, K; Dowdall, J; Andronis, C; Persidis, A; Konstanti, O In: Rinaldi, Fabio; Schneider, G; Kaljurand, K; Dowdall, J; Andronis, C; Persidis, A; Konstanti, O (2004). Mining relations in the GENIA corpus. In: Second European Workshop on Data Mining and Text Mining for Bioinformatics, Pisa, Italy, September 2004 - September 2004, 61-68. (2004) Abstract: Discovering the interactions between genes and proteins is seen as one of the core tasks in molecular biology. The quantity of research results in this area is growing at such arate that it is very dicult for individual researchers to keep track of them. As such results appear mainly in the form of scientic articles, it is necessary to process them in an ecient manner in order to be able to extract the relevant results. Many databases exist that aim at consolidating the newly gained knowledge in a format that is easily accessible and searchable, however the creators of such databases normally make use of human readers who manually curate the rel- evant papers. This is an expensive and time consuming process, besides, there might be a signicant time lag be- tween the publication of a result and its introduction into such databases. In this paper we propose a method for discovery of inter- actions between genes and proteins from the scientic liter- ature, based on a complete syntactic analysis of the corpus. We report on preliminary results. Keyword: 000 Computer science; 410 Linguistics; Institute of Computational Linguistics; knowledge & systems URL: https://www.zora.uzh.ch/id/eprint/19121/1/Rinaldi_Schneider_Kaljurand_2004.pdf https://www.zora.uzh.ch/id/eprint/19121/ https://doi.org/10.5167/uzh-19121 BASE Hide details Page: 1 2

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