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Efficient and Accurate Entity Recognition for Biomedical Text
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In: Rinaldi, Fabio; Furrer, Lenz; Basaldella, Marco (2017). Efficient and Accurate Entity Recognition for Biomedical Text. In: BioCreative VI Workshop, Bethesda, MD, USA, 18 October 2017 - 20 October 2017, 195-197. (2017)
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Retrospective analysis of 11 years of livestock necropsy data : evaluation for animal health surveillance
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In: Faverjon, Céline; Küker, Susanne; Furrer, Lenz; Berezowski, John; Posthaus, Horst; Rinaldi, Fabio; Vial, Flavie (2017). Retrospective analysis of 11 years of livestock necropsy data : evaluation for animal health surveillance. In: 3rd International Conference on Animal Health Surveillance, Rotorua, New Zealand, 30 April 2017 - 4 May 2017, 228-230. (2017)
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RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond
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In: ISSN: 0305-1048 ; EISSN: 1362-4962 ; Nucleic Acids Research ; https://hal-amu.archives-ouvertes.fr/hal-01460125 ; Nucleic Acids Research, Oxford University Press, 2016, 44 (D1), pp.D133-D143. ⟨10.1093/nar/gkv1156⟩ (2016)
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Overview of the interactive task in BioCreative V
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In: ISSN: 1758-0463 ; EISSN: 1758-0463 ; Database - The journal of Biological Databases and Curation ; https://hal.archives-ouvertes.fr/hal-01469079 ; Database - The journal of Biological Databases and Curation, Oxford University Press, 2016, 2016, ⟨10.1093/database/baw119⟩ ; https://academic.oup.com/database/article-lookup/doi/10.1093/database/baw119 (2016)
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Author Name Disambiguation in MEDLINE Based on Journal Descriptors and Semantic Types
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In: Vishnyakova, Dina; Rodriguez-Esteban, Raul; Ozol, Khan; Rinaldi, Fabio (2016). Author Name Disambiguation in MEDLINE Based on Journal Descriptors and Semantic Types. In: Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining, Osaka, Japan, 12 December 2016 - 13 December 2016. (2016)
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Ontogene Term and Relation Recognition for CDR
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In: Ellendorff, Tilia Renate; Clematide, Simon; van der Lek, Adrian; Furrer, Lenz; Rinaldi, Fabio (2015). Ontogene Term and Relation Recognition for CDR. In: BioCreative V, Sevilla, 9 September 2015 - 11 September 2015, 305-310. (2015)
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Biocuration of microRNAs in idiopathic pulmonary fibrosis
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In: Balderas Martinez, Yalbi I; Rinaldi, Fabio; Contreras, Gabriela (2015). Biocuration of microRNAs in idiopathic pulmonary fibrosis. In: BioCreative V, Sevilla, 9 September 2015 - 11 September 2015, 435-441. (2015)
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Track 4 Overview: Extraction of Causal Network Information in Biological Expression Language (BEL)
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In: Fluck, Juliane; Madan, Sumit; Ellendorff, Tilia Renate; Mevissen, Theo; Clematide, Simon; van der Lek, Adrian; Rinaldi, Fabio (2015). Track 4 Overview: Extraction of Causal Network Information in Biological Expression Language (BEL). In: BioCreative V, Sevilla, 9 September 2015 - 11 September 2015, 333-346. (2015)
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OntoPDF: using a text mining pipeline to generate enriched PDF versions of scientific papers
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In: Zhu, Yi; Rinaldi, Fabio (2014). OntoPDF: using a text mining pipeline to generate enriched PDF versions of scientific papers. In: 6th International Symposium on Semantic Mining in Biomedicine, Aveiro, Portugal, 6 October 2014 - 7 October 2014, 85-89. (2014)
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BioC: a minimalist approach to interoperability for biomedical text processing
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Exploiting BabelNet for multilingual biomedical synonym expansion ...
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BioC: a minimalist approach to interoperability for biomedical text processing
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How preferred are preferred terms?
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In: Grigonyte, Gintare; Clematide, Simon; Rinaldi, Fabio (2013). How preferred are preferred terms? In: Kosem, I; Kallas, J; Gantar, P; Krek, S; Langemets, M; Tuulik, M. Electronic lexicography in the 21st century: thinking outside the paper. Proceedings of the eLex 2013 conference, 17-19 October 2013, Tallinn, Estonia. Ljubljana/Tallinn: eLex, 452-459. (2013)
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UZH in BioNLP 2013
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In: Schneider, Gerold; Clematide, Simon; Ellendorff, Tilia; Tuggener, Don; Rinaldi, Fabio; Grigonyte, Gintare (2013). UZH in BioNLP 2013. In: Proceedings of the BioNLP Shared Task 2013 Workshop, Sophia, Bulgaria, 9 August 2013 - 9 August 2013, 116-120. (2013)
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ODIN: a customizable literature curation tool
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In: Rinaldi, Fabio; Davis, Allan Peter; Southan, Christopher; Clematide, Simon; Ellendorff, Tilia Renate; Schneider, Gerold (2013). ODIN: a customizable literature curation tool. In: Fourth BioCreative Challenge Evaluation Workshop, Bethesda, MD, US, 7 October 2013 - 9 October 2013, 219-223. (2013)
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Assisted curation of growth conditions that affect gene expression in E. coli K-12
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In: Gama, Socorro -Castro; Rinaldi, Fabio; et al (2013). Assisted curation of growth conditions that affect gene expression in E. coli K-12. In: Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, Bethesda, MD, US, 7 October 2013 - 9 October 2013, 214-218. (2013)
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PyBioC: a python implementation of the BioC core
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In: Marques, Hernani; Rinaldi, Fabio (2013). PyBioC: a python implementation of the BioC core. In: Fourth BioCreative Challenge Evaluation Workshop, Bethesda, MD, US, 7 October 2013 - 9 October 2013, 2-4. (2013)
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OntoGene: CTD entity and action term recognition
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In: Rinaldi, Fabio; Clematide, Simon; Ellendorff, Tilia Renate; Marques, Hernani (2013). OntoGene: CTD entity and action term recognition. In: Fourth BioCreative Challenge Evaluation Workshop, Bethesda, MD, US, 7 October 2013 - 9 October 2013, 90-94. (2013)
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The OntoGene literature mining web service
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In: Rinaldi, Fabio (2013). The OntoGene literature mining web service. EMBnet Journal, 19(Suppl B):32-35. (2013)
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