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All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year Sort by creator [A → Z]' creator [Z → A]' publishing year ↑ (asc)' publishing year ↓ (desc)' title [A → Z]' title [Z → A]' Simple Search Hits 1 – 20 of 20 1 Building Large Lexicalized Ontologies from Text: a Use Case in Automatic Indexing of Biotechnology Patents ... Nédellec, Claire; Golik, Wiktoria; Aubin, Sophie. - : arXiv, 2020 BASE Show details 2 Integration Of Alvis Within The Openminted Platform As Galaxy Utilities ... Bohuon, Jean-Baptiste; Ba, Mouhamadou; Chaix, Estelle. - : Zenodo, 2017 BASE Show details 3 Integration Of Alvis Within The Openminted Platform As Galaxy Utilities ... Bohuon, Jean-Baptiste; Ba, Mouhamadou; Chaix, Estelle. - : Zenodo, 2017 BASE Show details 4 Annotation Guidelines BIONLP-ST 2016 SeeDev task Chaix, Estelle; Dubreucq, Bertrand,; Valsamou, Dialekti... In: https://hal.inrae.fr/hal-02795594 ; 2016, pp.47 ; https://sites.google.com/site/bionlpst2016/tasks/seedev/AnnotationGuidelinesBIONLP-ST2016-SeeDevtask%285%29.pdf (2016) BASE Show details 5 Shared Task SeeDev : Extraction de régulations impliquées dans le développement de la graine d’Arabidopsis thaliana à partir de publications scientifiques Chaix, Estelle; Dubreucq, Bertrand; Valsamou, Dialekti... In: Les journées Bioinformatique de l'Inra ; https://hal.archives-ouvertes.fr/hal-01455855 ; Les journées Bioinformatique de l'Inra, Mar 2016, Montpellier, France. pp.1 (2016) BASE Show details 6 Overview of the regulatory network of plant seed development (SeeDev) task at the BioNLP shared task 2016 Chaix, Estelle; Dubreucq, Bertrand; Fatihi, Abdelhak; Valsamou, Dialekti; Bossy, Robert; Ba, Mouhamadou; Deleger, Louise; Zweigenbaum, Pierre; Bessieres, Philippe; Lepiniec, Loic; Nédellec, Claire In: Proceedings of the 4th BioNLP Shared Task Workshop ; BioNLP Shared Task ; https://hal.archives-ouvertes.fr/hal-01455854 ; BioNLP Shared Task, Aug 2016, Berlin, Germany. pp.113 ; https://www.aclweb.org/anthology/W/W16/W16-3001.pdf (2016) Abstract: This paper presents the SeeDev Task of the BioNLP Shared Task 2016. The purpose of the SeeDev Task is the extraction from scientific articles of the descriptions of genetic and molecular mechanisms involved in seed development of the model plant, Arabidopsis thaliana. The SeeDev task consists in the extraction of many different event types that involve a wide range of entity types so that they accurately reflect the complexity of the biological mechanisms. The corpus is composed of paragraphs selected from the full-texts of relevant scientific articles. In this paper, we describe the organization of the SeeDev task, the corpus characteristics, and the metrics used for the evaluation of participant systems. We analyze and discuss the final results of the seven participant systems to the test. The best F-score is 0.432, which is similar to the scores achieved in similar tasks on molecular biology. Keyword: [INFO.INFO-AI]Computer Science [cs]/Artificial Intelligence [cs.AI]; [SDV.BV]Life Sciences [q-bio]/Vegetal Biology; Arabidopsis Thaliana; BioNLP; corpus; F-score; Information extraction; Molecular; plant biology; plant development; Shared task; text-mining URL: https://hal.archives-ouvertes.fr/hal-01455854 https://hal.archives-ouvertes.fr/hal-01455854/file/overview_1.pdf https://hal.archives-ouvertes.fr/hal-01455854/document BASE Hide details 7 OntoBiotope, technologies sémantiques pour l’étude des habitats microbiens Nédellec, Claire; Bossy, Robert; Ratkovic, Zorana... In: Méta-omiques des Ecosystèmes Microbiens ; https://hal.inrae.fr/hal-02889012 ; Méta-omiques des Ecosystèmes Microbiens, Sep 2015, Paris, France (2015) BASE Show details 8 Information extraction from articles for the elaboration of the regulatory networks involved in Arabidopsis seed development Dubreucq, Bertrand; Valsamou, Dialekti; Fatihi, Abdelhak... In: 26th International Conference on Arabidopsis Research ; https://hal.archives-ouvertes.fr/hal-01524850 ; 26th International Conference on Arabidopsis Research, Jul 2015, Paris, France (2015) BASE Show details 9 Knowledge model of regulatory networks involved in Arabidopsis seed development for information extraction and integration from text Chaix, Estelle; Dubreucq, Bertrand; Valsamou, Dialekti... In: BioCreative 5 ; https://hal.archives-ouvertes.fr/hal-01512197 ; BioCreative 5, Sep 2015, Madrid, Spain (2015) BASE Show details 10 Validation de marqueurs liés à des gènes d’intérêt en vue de l’établissement d’une base de données pour la sélection assistée chez le blé tendre Ranoux, Marion; Nédellec, Claire; Cariou-Pham, Emmanuelle... In: Synthèse des Programmes de Recherche FSOV. Actes de la 4ème Rencontre Scientifique ; https://hal.archives-ouvertes.fr/hal-02340478 ; Synthèse des Programmes de Recherche FSOV. Actes de la 4ème Rencontre Scientifique, FSOV., Jan 2015, Paris, France. 5 p ; https://www.fsov.org/4eme-rencontre-scientifique-du-fsov (2015) BASE Show details 11 Information extraction from articles for the elaboration of the regulatory networks involved in Arabidopsis seed development ... Dubreucq, Bertrand; Dialekti Valsamou; Abdelhak Fatihi. - : Unpublished, 2015 BASE Show details 12 Validation de marqueurs liés à des gènes d’intérêt en vue de l’établissement d’une base de données pour la sélection assistée chez le blé tendre ... Ranoux, Marion; Nedellec, Claire; Cariou-Pham, Emmanuelle. - : FSOV, fonds de soutien à l’obtention végétal, 2015 BASE Show details 13 Information Extraction Challenge Gene Regulation Network in Arabidopsis thaliana (GRNA) ... Chaix, Estelle; Dubreucq, Bertrand; Dialekti Valsamou. - : Unpublished, 2015 BASE Show details 14 Overview of the gene regulation network and the bacteria biotope tasks in BioNLP'13 shared task Bossy, Robert; Golik, Wiktoria; Ratkovic, Zorana. - : BioMed Central, 2015 BASE Show details 15 Information extraction from bibliography for Marker Assisted Selection in wheat Nédellec, Claire; Bossy, Robert; Valsamou, Dialekti... In: Metadata and Semantics Research ; MTSR 2014 : 8th Metadata and Semantics ; https://hal.archives-ouvertes.fr/hal-01132767 ; MTSR 2014 : 8th Metadata and Semantics, Nov 2014, Karlsruhe, Germany. pp.301-313, ⟨10.1007/978-3-319-13674-5_28⟩ ; https://archives-publications.inrae.fr/279506 (2014) BASE Show details 16 Elaboration du réseau de régulation impliqué dans le développement de la graine chez Arabidopsis thaliana ... Dubreucq, Bertrand; Dialekti Valsamou; Bossy, Robert. - : Unpublished, 2014 BASE Show details 17 Extraction d’information pour la sélection du blé par marqueur génétique ... Dialekti Valsamou; Bossy, Robert; Ranoux, Marion. - : Unpublished, 2014 BASE Show details 18 Guidelines for the annotation of information for marker assisted selection in wheat FSOV Sam Blé project Nédellec, Claire; Bossy, Robert; Ranoux, Marion... In: https://hal.inrae.fr/hal-03620421 ; 2013 (2013) BASE Show details 19 Overview of BioNLP shared task 2011 Kim, Jin-Dong; Pyysalo, Sampo; Ohta, Tomoko... In: The 49th Annual Meeting of the Association for Computational Linguistics: Human Language Technologies ; https://hal.inrae.fr/hal-02745923 ; The 49th Annual Meeting of the Association for Computational Linguistics: Human Language Technologies, Jun 2011, Portland, Oregon, United States (2011) BASE Show details 20 BioNLP shared tasks 2011 - Bacteria Biotope Bossy, Robert,; Jourde, Julien,; Bessières, Philippe,... In: The 49th Annual Meeting of the Association for Computational Linguistics:Human Language Technologies ; https://hal.archives-ouvertes.fr/hal-01000519 ; The 49th Annual Meeting of the Association for Computational Linguistics:Human Language Technologies, Jun 2011, Portland, Oregon, United States. pp.56-64 ; http://aclweb.org/anthology/W11-18 (2011) BASE Show details

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