| 1 |
Genetic Neural Architecture Search for automatic assessment of human sperm images
|
|
|
|
In: ISSN: 0957-4174 ; Expert Systems with Applications ; https://hal.archives-ouvertes.fr/hal-03585035 ; Expert Systems with Applications, Elsevier, 2022 (2022)
|
|
BASE
|
|
Show details
|
|
|
| 2 |
Polygenic scores for intelligence, educational attainment and schizophrenia are differentially associated with core autism features, IQ, and adaptive behaviour in autistic individuals
|
|
|
|
In: https://hal-pasteur.archives-ouvertes.fr/pasteur-03261146 ; 2021 (2021)
|
|
BASE
|
|
Show details
|
|
|
| 3 |
Analysis of cortical activity for the development of brain-computer interfaces for speech ; Analyse d'activité corticale pour le développement d'interfaces cerveau-machine pour la parole
|
|
|
|
In: https://tel.archives-ouvertes.fr/tel-03578854 ; Bioinformatics [q-bio.QM]. Université Grenoble Alpes [2020-.], 2021. English. ⟨NNT : 2021GRALS022⟩ (2021)
|
|
BASE
|
|
Show details
|
|
|
| 4 |
Manual Evaluation of the Automatic Mapping of International Classification of Diseases (ICD)-11 (in French).
|
|
|
|
In: Studies in health technology and informatics ; https://hal.archives-ouvertes.fr/hal-03267464 ; Studies in health technology and informatics, 2020, 270, pp.1335-1336 (2020)
|
|
BASE
|
|
Show details
|
|
|
| 5 |
Assisted authoring for avoiding inadequate claims in scientific reporting ; Rédaction assistée pour éviter les affirmations inappropriées dans la rédaction scientifique
|
|
|
|
In: https://tel.archives-ouvertes.fr/tel-02938856 ; Bioinformatics [q-bio.QM]. Université Paris-Saclay; Universiteit van Amsterdam, 2020. English. ⟨NNT : 2020UPASS021⟩ (2020)
|
|
BASE
|
|
Show details
|
|
|
| 6 |
Hierarchical Overlap Graph
|
|
|
|
In: ISSN: 0020-0190 ; Information Processing Letters ; https://hal-lirmm.ccsd.cnrs.fr/lirmm-01674319 ; Information Processing Letters, Elsevier, 2020, 155, pp.#105862. ⟨10.1016/j.ipl.2019.105862⟩ (2020)
|
|
BASE
|
|
Show details
|
|
|
| 7 |
Multilingual enrichment of disease biomedical ontologies
|
|
|
|
In: Proceedings of the LREC 2020 Workshop on Multilingual Biomedical Text Processing (MultilingualBIO 2020) ; https://hal.archives-ouvertes.fr/hal-02531140 ; Proceedings of the LREC 2020 Workshop on Multilingual Biomedical Text Processing (MultilingualBIO 2020), May 2020, Marseille, France. pp.21-28 ; European Language Resources Association (2020)
|
|
BASE
|
|
Show details
|
|
|
| 8 |
Hand-gesture recognition based on EMG and event-based camera sensor fusion: a benchmark in neuromorphic computing
|
|
|
|
In: ISSN: 1662-4548 ; EISSN: 1662-453X ; Frontiers in Neuroscience ; https://hal.archives-ouvertes.fr/hal-02617084 ; Frontiers in Neuroscience, Frontiers, 2020, pp.36 ; https://www.frontiersin.org/ (2020)
|
|
BASE
|
|
Show details
|
|
|
| 9 |
Abstract neuron : formalizing dendritic integration and algebraic properties ; Neurone abstrait : une formalisation de l’intégration dendritique et ses propriétés algébriques
|
|
|
|
In: https://tel.archives-ouvertes.fr/tel-02389736 ; Bio-informatique [q-bio.QM]. Université Côte d'Azur, 2019. Français. ⟨NNT : 2019AZUR4001⟩ (2019)
|
|
BASE
|
|
Show details
|
|
|
| 10 |
A novel framework for biomedical entity sense induction
|
|
|
|
In: ISSN: 1532-0464 ; EISSN: 1532-0480 ; Journal of Biomedical Informatics ; https://hal-lirmm.ccsd.cnrs.fr/lirmm-01851988 ; Journal of Biomedical Informatics, Elsevier, 2018, 84, pp.31-41. ⟨10.1016/j.jbi.2018.06.007⟩ (2018)
|
|
Abstract:
International audience ; Background: Rapid advancements in biomedical research have accelerated the number of relevant electronic documents published online, ranging from scholarly articles to news, blogs, and user-generated social media content. Nevertheless, the vast amount of this information is poorly organized, making it difficult to navigate. Emerging technologies such as ontologies and knowledge bases (KBs) could help organize and track the information associated with biomedical research developments. A major challenge in the automatic construction of ontologies and KBs is the identification of words with its respective sense(s) from a free-text corpus. Word-sense induction (WSI) is a task to automatically induce the different senses of a target word in the This paper is a significant extension of our previous studies published in the proceedings of: 1) The 10th International Conference on Language Resources and Evaluation (LREC'2016) titled, " Automatic biomedical term polysemy detection " ; and 2) The 19th International Conference on Extending Database Technology (EDBT'2016) titled, " A way to automatically enrich biomedical ontologies " , with new scientific methodologies and results. 2 Juan Antonio Lossio-Ventura et al. different contexts. In the last two decades, there have been several efforts on WSI. However, few methods are effective in biomedicine and life sciences. Methods: We developed a framework for biomedical entity sense induction using a mixture of natural language processing, supervised, and unsupervised learning methods with promising results. It is composed of three main steps: 1) a polysemy detection method to determine if a biomedical entity has many possible meanings; 2) a clustering quality index-based approach to predict the number of senses for the biomedical entity; and 3) a method to induce the concept(s) (i.e., senses) of the biomedical entity in a given context. Results: To evaluate our framework, we used the well-known MSH WSD polysemic dataset that contains 203 annotated ambiguous biomedical entities, where each entity is linked to 2 to 5 concepts. Our polysemy detection method obtained an F-measure of 98%. Second, our approach for predicting the number of senses achieved an F-measure of 93%. Finally, we induced the concepts of the biomedical entities based on a clustering algorithm and then extracted the keywords of reach cluster to represent the concept. Conclusions: We have developed a framework for biomedical entity sense induction with promising results. Our study results can benefit a number of downstream applications, for example, help to resolve concept ambiguities when building Semantic Web KBs from biomedical text.
|
|
Keyword:
[INFO.INFO-AI]Computer Science [cs]/Artificial Intelligence [cs.AI]; [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]; [INFO.INFO-IR]Computer Science [cs]/Information Retrieval [cs.IR]; [INFO.INFO-TT]Computer Science [cs]/Document and Text Processing; [INFO.INFO-WB]Computer Science [cs]/Web; Biomedicine; BioNLP; Classification; Clustering; Number of cluster prediction; Polysemy detection; Word sense induction
|
|
URL: https://hal-lirmm.ccsd.cnrs.fr/lirmm-01851988v2/document
https://hal-lirmm.ccsd.cnrs.fr/lirmm-01851988
https://hal-lirmm.ccsd.cnrs.fr/lirmm-01851988v2/file/Article-JBI-Lossio-2018_YJBIN_2996_final.pdf
https://doi.org/10.1016/j.jbi.2018.06.007
|
|
BASE
|
|
Hide details
|
|
|
| 11 |
Evaluation of the Terminology Coverage in the French Corpus LiSSa.
|
|
|
|
In: ISSN: 0926-9630 ; EISSN: 1879-8365 ; Studies in Health Technology and Informatics ; https://hal.archives-ouvertes.fr/hal-01843039 ; Studies in Health Technology and Informatics, IOS Press, 2018, pp.126-130 (2018)
|
|
BASE
|
|
Show details
|
|
|
| 12 |
A de novo approach to disentangle partner identity and function in holobiont systems
|
|
|
|
In: ISSN: 2049-2618 ; Microbiome ; https://hal.archives-ouvertes.fr/hal-01643153 ; Microbiome, BioMed Central, 2018, pp.1-35. ⟨10.1101/221424⟩ (2018)
|
|
BASE
|
|
Show details
|
|
|
| 13 |
Shared genetic aetiology between cognitive performance and brain activations in language and math tasks
|
|
|
|
In: ISSN: 2045-2322 ; EISSN: 2045-2322 ; Scientific Reports ; https://hal-cea.archives-ouvertes.fr/cea-01944702 ; Scientific Reports, Nature Publishing Group, 2018, 8, pp.17624. ⟨10.1038/s41598-018-35665-0⟩ (2018)
|
|
BASE
|
|
Show details
|
|
|
| 14 |
Long-Term Cognitive Prognosis of Profoundly Deaf Older Adults After Hearing Rehabilitation Using Cochlear Implants
|
|
|
|
In: ISSN: 0002-8614 ; EISSN: 1532-5415 ; Journal of the American Geriatrics Society ; https://hal.archives-ouvertes.fr/hal-01958660 ; Journal of the American Geriatrics Society, Wiley, 2018, 66 (8), pp.1553--1561. ⟨10.1111/jgs.15445⟩ (2018)
|
|
BASE
|
|
Show details
|
|
|
| 15 |
SIFR Annotator: Ontology-Based Semantic Annotation of French Biomedical Text and Clinical Notes
|
|
|
|
In: ISSN: 1471-2105 ; BMC Bioinformatics ; https://hal-lirmm.ccsd.cnrs.fr/lirmm-01934127 ; BMC Bioinformatics, BioMed Central, 2018, 19 (1), pp.405-431. ⟨10.1186/s12859-018-2429-2⟩ (2018)
|
|
BASE
|
|
Show details
|
|
|
| 16 |
Smart graphical dialogue, based on an ontology, for a memory prosthesis ; Dialogue graphique intelligent, fondé sur une ontologie, pour une prothèse de mémoire
|
|
|
|
In: https://tel.archives-ouvertes.fr/tel-01884550 ; Bio-informatique [q-bio.QM]. Conservatoire national des arts et metiers - CNAM; Université de Sfax (Tunisie). Faculté des Sciences économiques et de gestion, 2018. Français. ⟨NNT : 2018CNAM1181⟩ (2018)
|
|
BASE
|
|
Show details
|
|
|
| 17 |
From Patient Discharge Summaries to an Ontology for Psychiatry.
|
|
|
|
In: Studies in health technology and informatics ; https://hal.archives-ouvertes.fr/hal-03267474 ; Studies in health technology and informatics, 2017, 245, pp.930-934 (2017)
|
|
BASE
|
|
Show details
|
|
|
| 18 |
Sorting permutations by prefix and suffix rearrangements
|
|
|
|
In: ISSN: 0219-7200 ; Journal of Bioinformatics and Computational Biology ; https://hal.archives-ouvertes.fr/hal-01524046 ; Journal of Bioinformatics and Computational Biology, World Scientific Publishing, 2017, 15 (1), pp.1-46. ⟨10.1142/S0219720017500020⟩ (2017)
|
|
BASE
|
|
Show details
|
|
|
| 19 |
Varieties of semantic cognition revealed through simultaneous decomposition of intrinsic brain connectivity and behaviour
|
|
|
|
In: ISSN: 1053-8119 ; EISSN: 1095-9572 ; NeuroImage ; https://hal.archives-ouvertes.fr/hal-01546394 ; NeuroImage, Elsevier, 2017, pp.34. ⟨10.1016/j.neuroimage.2017.06.067⟩ (2017)
|
|
BASE
|
|
Show details
|
|
|
| 20 |
Full Compressed Affix Tree Representations
|
|
|
|
In: IEEE Data Compression Conference ; DCC: Data Compression Conference ; https://hal-lirmm.ccsd.cnrs.fr/lirmm-02093302 ; DCC: Data Compression Conference, IEEE, Apr 2017, Snowbird, UT, United States. pp.102-111, ⟨10.1109/DCC.2017.39⟩ ; http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=7921793 (2017)
|
|
BASE
|
|
Show details
|
|
|
|
|
