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All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year Sort by creator [A → Z]' creator [Z → A]' publishing year ↑ (asc)' publishing year ↓ (desc)' title [A → Z]' title [Z → A]' Simple Search Hits 1 – 6 of 6 1 Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0. Heirendt, Laurent; Arreckx, Sylvain; Pfau, Thomas... In: Nature protocols, vol 14, iss 3 (2019) BASE Show details 2 Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0. Heirendt, Laurent; Arreckx, Sylvain; Pfau, Thomas... In: Nature protocols, vol 14, iss 3 (2019) BASE Show details 3 Creation and analysis of biochemical constraint-based models: the COBRA Toolbox v3.0 Phan, Vuong Tu; Heirendt, Laurent; Arreckx, Sylvain. - 2019 BASE Show details 4 Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0 Heirendt, Laurent; Arreckx, Sylvain; Pfau, Thomas. - : Springer Nature, 2019 BASE Show details 5 Creation and analysis of biochemical constraint-based models: the COBRA Toolbox v3.0 Heirendt, Laurent; Arreckx, Sylvain; Pfau, Thomas; Mendoza, Sebastián N.; Richelle, Anne; Heinken, Almut; Haraldsdóttir, Hulda S.; Wachowiak, Jacek; Keating, Sarah M.; Vlasov, Vanja; Magnusdóttir, Stefania; Ng, Chiam Yu; Preciat, German; Žagare, Alise; Chan, Siu H.J.; Aurich, Maike K.; Clancy, Catherine M.; Modamio, Jennifer; Sauls, John T.; Noronha, Alberto; Bordbar, Aarash; Cousins, Benjamin; El Assal, Diana C.; Valcarcel, Luis V.; Apaolaza, Iñigo; Ghaderi, Susan; Ahookhosh, Masoud; Guebila, Marouen Ben; Kostromins, Andrejs; Sompairac, Nicolas; Le, Hoai M.; Ma, Ding; Sun, Yuekai; Wang, Lin; Yurkovich, James T.; Oliveira, Miguel A.P.; Vuong, Phan T.; El Assal, Lemmer P.; Kuperstein, Inna; Zinovyev, Andrei; Hinton, H. Scott; Bryant, William A.; Artacho, Francisco J. Aragón; Planes, Francisco J.; Stalidzans, Egils; Maass, Alejandro; Vempala, Santosh; Hucka, Michael; Saunders, Michael A.; Maranas, Costas D.; Lewis, Nathan E.; Sauter, Thomas; Palsson, Bernhard Ø.; Thiele, Ines; Fleming, Ronan M.T.. - 2019 Abstract: COnstraint-Based Reconstruction and Analysis (COBRA) provides a molecular mechanistic framework for integrative analysis of experimental molecular systems biology data and quantitative prediction of physicochemically and biochemically feasible phenotypic states. The COBRA Toolbox is a comprehensive desktop software suite of interoperable COBRA methods. It has found widespread applications in biology, biomedicine, and biotechnology because its functions can be flexibly combined to implement tailored COBRA protocols for any biochemical network. This protocol is an update to the COBRA Toolbox 1.0 and 2.0. Version 3.0 includes new methods for quality controlled reconstruction, modelling, topological analysis, strain and experimental design, network visualisation as well as network integration of chemoin-formatic, metabolomic, transcriptomic, proteomic, and thermochemical data. New multi-lingual code integration also enables an expansion in COBRA application scope via high-precision, high-performance, and nonlinear numerical optimisation solvers for multi-scale, multi-cellular and reaction kinetic modelling, respectively. This protocol overviews all of these new features and can be adapted to generate and analyse constraint-based models in a wide variety of scenarios. The COBRA Toolbox 3.0 provides an unparalleled depth of constraint-based reconstruction and analysis methods. Keyword: Article URL: http://www.ncbi.nlm.nih.gov/pubmed/30787451 https://doi.org/10.1038/s41596-018-0098-2 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6635304/ BASE Hide details 6 Creation and analysis of biochemical constraint-based models: the COBRA Toolbox v3.0 ... Heirendt, Laurent; Arreckx, Sylvain; Pfau, Thomas. - : arXiv, 2017 BASE Show details

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