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All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year Sort by creator [A → Z]' creator [Z → A]' publishing year ↑ (asc)' publishing year ↓ (desc)' title [A → Z]' title [Z → A]' Simple Search Page: 1 2 3 Hits 1 – 20 of 42 1 UBERT: A Novel Language Model for Synonymy Prediction at Scale in the UMLS Metathesaurus ... Wijesiriwardene, Thilini; Nguyen, Vinh; Bajaj, Goonmeet. - : arXiv, 2022 BASE Show details 2 Evaluating Biomedical BERT Models for Vocabulary Alignment at Scale in the UMLS Metathesaurus ... Bajaj, Goonmeet; Nguyen, Vinh; Wijesiriwardene, Thilini. - : arXiv, 2021 BASE Show details 3 Assessing the enrichment of dietary supplement coverage in the Unified Medical Language System Vasilakes, Jake; Bompelli, Anusha; Bishop, Jeffrey R; Adam, Terrence J; Bodenreider, Olivier; Zhang, Rui In: J Am Med Inform Assoc (2020) Abstract: OBJECTIVE: We sought to assess the need for additional coverage of dietary supplements (DS) in the Unified Medical Language System (UMLS) by investigating (1) the overlap between the integrated DIetary Supplements Knowledge base (iDISK) DS ingredient terminology and the UMLS and (2) the coverage of iDISK and the UMLS over DS mentions in the biomedical literature. MATERIALS AND METHODS: We estimated the overlap between iDISK and the UMLS by mapping iDISK to the UMLS using exact and normalized strings. The coverage of iDISK and the UMLS over DS mentions in the biomedical literature was evaluated via a DS named-entity recognition (NER) task within PubMed abstracts. RESULTS: The coverage analysis revealed that only 30% of iDISK terms can be matched to the UMLS, although these cover over 99% of iDISK concepts. A manual review revealed that a majority of the unmatched terms represented new synonyms, rather than lexical variants. For NER, iDISK nearly doubles the precision and achieves a higher F1 score than the UMLS, while maintaining a competitive recall. DISCUSSION: While iDISK has significant concept overlap with the UMLS, it contains many novel synonyms. Furthermore, almost 3000 of these overlapping UMLS concepts are missing a DS designation, which could be provided by iDISK. The NER experiments show that the specialization of iDISK is useful for identifying DS mentions. CONCLUSIONS: Our results show that the DS representation in the UMLS could be enriched by adding DS designations to many concepts and by adding new synonyms. Keyword: Research and Applications URL: http://www.ncbi.nlm.nih.gov/pubmed/32940692 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7566420/ https://doi.org/10.1093/jamia/ocaa128 BASE Hide details 4 IMIA LaMB WG publications: Medical Concept Representation ‐ the Years Beyond 2000 ... Balkanyi, Laszlo; Schulz, Stefan; Cornet, Ronald. - : Zenodo, 2019 BASE Show details 5 IMIA LaMB WG publications: Medical Concept Representation ‐ the Years Beyond 2000 ... Balkanyi, Laszlo; Schulz, Stefan; Cornet, Ronald. - : Zenodo, 2019 BASE Show details 6 IMIA LaMB WG publications: 'Biomedical Semantics in the Big Data Era' - conference paper introducing the related workshop, MEDINFO, 2015 ... Cornet, Ronald; Balkanyi, Laszlo; Bodenreider, Olivier. - : Zenodo, 2019 BASE Show details 7 IMIA LaMB WG publications: 'Biomedical Semantics in the Big Data Era' - conference paper introducing the related workshop, MEDINFO, 2015 ... Cornet, Ronald; Balkanyi, Laszlo; Bodenreider, Olivier. - : Zenodo, 2019 BASE Show details 8 Auditing SNOMED CT Hierarchical Relations Based on Lexical Features of Concepts in Non-Lattice Subgraphs Cui, Licong; Bodenreider, Olivier; Shi, Jay... In: Computer Science Faculty Publications (2018) BASE Show details 9 Interoperability of Medication Classification Systems: Lessons Learned Mapping Established Pharmacologic Classes (EPCs) to SNOMED CT Nelson, Scott D; Parker, Jaqui; Lario, Robert. - 2017 BASE Show details 10 Auditing SNOMED CT hierarchical relations based on lexical features of concepts in non-lattice subgraphs Cui, Licong; Bodenreider, Olivier; Shi, Jay. - 2017 BASE Show details 11 “Hybrid Topics” -- Facilitating the Interpretation of Topics Through the Addition of MeSH Descriptors to Bags of Words Yu, Zhiguo; Nguyen, Thang; Dhombres, Ferdinand. - 2017 BASE Show details 12 Mining Non-Lattice Subgraphs for Detecting Missing Hierarchical Relations and Concepts in SNOMED CT Cui, Licong; Zhu, Wei; Tao, Shiqiang... In: Computer Science Faculty Publications (2017) BASE Show details 13 Context-Driven Automatic Subgraph Creation for Literature-Based Discovery Cameron, Delroy H.; Kavuluru, Ramakanth; Rindflesch, Thomas... In: Kno.e.sis Publications (2015) BASE Show details 14 iExplore: Interactive Browsing and Exploring Biomedical Knowledge Nguyen, Vinh; Bodenreider, Olivier; Srinivasan, Jagannathan... In: Amit P. Sheth (2014) BASE Show details 15 A Graph-Based Recovery and Decomposition of Swanson’s Hypothesis using Semantic Predications Cameron, Delroy H.; Bodenreider, Olivier; Yalamanchili, Himi... In: Krishnaprasad Thirunarayan (2014) BASE Show details 16 Context-Driven Automatic Subgraph Creation for Literature-Based Discovery Cameron, Delroy H.; Kavuluru, Ramakanth; Rindflesch, Thomas... In: Amit P. Sheth (2014) BASE Show details 17 Context-Driven Automatic Subgraph Creation for Literature-Based Discovery Cameron, Delroy H.; Kavuluru, Ramakanth; Rindflesch, Thomas... In: Krishnaprasad Thirunarayan (2014) BASE Show details 18 A Graph-Based Recovery and Decomposition of Swanson’s Hypothesis using Semantic Predications Cameron, Delroy H.; Bodenreider, Olivier; Yalamanchili, Himi... In: Amit P. Sheth (2014) BASE Show details 19 iExplore: Interactive Browsing and Exploring Biomedical Knowledge Nguyen, Vinh; Bodenreider, Olivier; Srinivasan, Jagannathan... In: Krishnaprasad Thirunarayan (2014) BASE Show details 20 A Graph-Based Recovery and Decomposition of Swanson’s Hypothesis using Semantic Predications Cameron, Delroy H.; Bodenreider, Olivier; Yalamanchili, Himi... In: Kno.e.sis Publications (2013) BASE Show details Page: 1 2 3

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