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Using natural language processing to extract health-related causality from Twitter messages ...
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Extracting health-related causality from twitter messages using natural language processing
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A Preliminary Study of Clinical Concept Detection Using Syntactic Relations
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Rapid Adaptation of POS Tagging for Domain Specific Uses ...
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iSimp in BioC standard format: enhancing the interoperability of a sentence simplification system
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Abstract:
This article reports the use of the BioC standard format in our sentence simplification system, iSimp, and demonstrates its general utility. iSimp is designed to simplify complex sentences commonly found in the biomedical text, and has been shown to improve existing text mining applications that rely on the analysis of sentence structures. By adopting the BioC format, we aim to make iSimp readily interoperable with other applications in the biomedical domain. To examine the utility of iSimp in BioC, we implemented a rule-based relation extraction system that uses iSimp as a preprocessing module and BioC for data exchange. Evaluation on the training corpus of BioNLP-ST 2011 GENIA Event Extraction (GE) task showed that iSimp sentence simplification improved the recall by 3.2% without reducing precision. The iSimp simplification-annotated corpora, both our previously used corpus and the GE corpus in the current study, have been converted into the BioC format and made publicly available at the project’s Web site: http://research.bioinformatics.udel.edu/isimp/.
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Keyword:
Original Article
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URL: https://doi.org/10.1093/database/bau038 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4028706 http://www.ncbi.nlm.nih.gov/pubmed/24850848
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BioC: a minimalist approach to interoperability for biomedical text processing
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BioC: a minimalist approach to interoperability for biomedical text processing
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Rapid Adaptation of POS Tagging for Domain Specific Uses ...
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