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All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year Sort by creator [A → Z]' creator [Z → A]' publishing year ↑ (asc)' publishing year ↓ (desc)' title [A → Z]' title [Z → A]' Simple Search Hits 1 – 7 of 7 1 Shared Task SeeDev : Extraction de régulations impliquées dans le développement de la graine d’Arabidopsis thaliana à partir de publications scientifiques Chaix, Estelle; Dubreucq, Bertrand; Valsamou, Dialekti... In: Les journées Bioinformatique de l'Inra ; https://hal.archives-ouvertes.fr/hal-01455855 ; Les journées Bioinformatique de l'Inra, Mar 2016, Montpellier, France. pp.1 (2016) BASE Show details 2 Overview of the regulatory network of plant seed development (SeeDev) task at the BioNLP shared task 2016 Chaix, Estelle; Dubreucq, Bertrand; Fatihi, Abdelhak; Valsamou, Dialekti; Bossy, Robert; Ba, Mouhamadou; Deleger, Louise; Zweigenbaum, Pierre; Bessieres, Philippe; Lepiniec, Loic; Nédellec, Claire In: Proceedings of the 4th BioNLP Shared Task Workshop ; BioNLP Shared Task ; https://hal.archives-ouvertes.fr/hal-01455854 ; BioNLP Shared Task, Aug 2016, Berlin, Germany. pp.113 ; https://www.aclweb.org/anthology/W/W16/W16-3001.pdf (2016) Abstract: This paper presents the SeeDev Task of the BioNLP Shared Task 2016. The purpose of the SeeDev Task is the extraction from scientific articles of the descriptions of genetic and molecular mechanisms involved in seed development of the model plant, Arabidopsis thaliana. The SeeDev task consists in the extraction of many different event types that involve a wide range of entity types so that they accurately reflect the complexity of the biological mechanisms. The corpus is composed of paragraphs selected from the full-texts of relevant scientific articles. In this paper, we describe the organization of the SeeDev task, the corpus characteristics, and the metrics used for the evaluation of participant systems. We analyze and discuss the final results of the seven participant systems to the test. The best F-score is 0.432, which is similar to the scores achieved in similar tasks on molecular biology. Keyword: [INFO.INFO-AI]Computer Science [cs]/Artificial Intelligence [cs.AI]; [SDV.BV]Life Sciences [q-bio]/Vegetal Biology; Arabidopsis Thaliana; BioNLP; corpus; F-score; Information extraction; Molecular; plant biology; plant development; Shared task; text-mining URL: https://hal.archives-ouvertes.fr/hal-01455854 https://hal.archives-ouvertes.fr/hal-01455854/file/overview_1.pdf https://hal.archives-ouvertes.fr/hal-01455854/document BASE Hide details 3 OntoBiotope, technologies sémantiques pour l’étude des habitats microbiens Nédellec, Claire; Bossy, Robert; Ratkovic, Zorana... In: Méta-omiques des Ecosystèmes Microbiens ; https://hal.inrae.fr/hal-02889012 ; Méta-omiques des Ecosystèmes Microbiens, Sep 2015, Paris, France (2015) BASE Show details 4 Information extraction from articles for the elaboration of the regulatory networks involved in Arabidopsis seed development Dubreucq, Bertrand; Valsamou, Dialekti; Fatihi, Abdelhak... In: 26th International Conference on Arabidopsis Research ; https://hal.archives-ouvertes.fr/hal-01524850 ; 26th International Conference on Arabidopsis Research, Jul 2015, Paris, France (2015) BASE Show details 5 Knowledge model of regulatory networks involved in Arabidopsis seed development for information extraction and integration from text Chaix, Estelle; Dubreucq, Bertrand; Valsamou, Dialekti... In: BioCreative 5 ; https://hal.archives-ouvertes.fr/hal-01512197 ; BioCreative 5, Sep 2015, Madrid, Spain (2015) BASE Show details 6 Information extraction from articles for the elaboration of the regulatory networks involved in Arabidopsis seed development ... Dubreucq, Bertrand; Dialekti Valsamou; Abdelhak Fatihi. - : Unpublished, 2015 BASE Show details 7 Information Extraction Challenge Gene Regulation Network in Arabidopsis thaliana (GRNA) ... Chaix, Estelle; Dubreucq, Bertrand; Dialekti Valsamou. - : Unpublished, 2015 BASE Show details

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