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All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year Sort by creator [A → Z]' creator [Z → A]' publishing year ↑ (asc)' publishing year ↓ (desc)' title [A → Z]' title [Z → A]' Simple Search Page: 1 2 Hits 1 – 20 of 29 1 Measuring the Public Account- ability of New Modes of Governance Wüest, Bruno; Schneider, G; Amsler, Michael In: Wüest, Bruno; Schneider, G; Amsler, Michael (2014). Measuring the Public Account- ability of New Modes of Governance. In: ACL Workshop on Language Technology and Computational Social Science, Baltimore, Maryland, USA, 24 June 2014 - 26 June 2014. (2014) BASE Show details 2 The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text Krallinger, M; Vazquez, M; Leitner, F... In: Krallinger, M; Vazquez, M; Leitner, F; Salgado, D; Chatr-aryamontri, A; Winter, A; Perfetto, L; Briganti, L; Licata, L; Iannuccelli, M; Castagnoli, L; Cesareni, G; Tyers, M; Schneider, G; Rinaldi, Fabio; Leaman, R; Gonzalez, G; Matos, S; Kim, S; Wilbur, W J; Rocha, L; Shatkay, H; Tendulkar, A V; Agarwal, S; Liu, F; Wang, X; Rak, R; Noto, K; Elkan, C; Lu, Z (2011). The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. BMC Bioinformatics, 12(Suppl 8):S3. (2011) BASE Show details 3 Mining complex Drug/Gene/Disease relations Rinaldi, Fabio; Schneider, G; Clematide, S In: Rinaldi, Fabio; Schneider, G; Clematide, S (2011). Mining complex Drug/Gene/Disease relations. In: Pacific Symposium on Biocomputing Workshop "Mining the Pharmacogenomics Literature", Hawaii, 3 January 2011 - 7 January 2011. (2011) BASE Show details 4 OntoGene at CALBC II and Some Thoughts on the Need of Document-Wide Harmonization Clematide, S; Rinaldi, Fabio; Schneider, G In: Clematide, S; Rinaldi, Fabio; Schneider, G (2011). OntoGene at CALBC II and Some Thoughts on the Need of Document-Wide Harmonization. In: Second CALBC Workshop, Hinxton, Cambridgeshire, UK, 16 March 2011 - 18 March 2011, 48-51. (2011) BASE Show details 5 ODIN: an advanced interface for the curation of biomedical literature Rinaldi, Fabio; Clematide, S; Schneider, G... In: Rinaldi, Fabio; Clematide, S; Schneider, G; Romacker, M; Vachon, Th (2010). ODIN: an advanced interface for the curation of biomedical literature. In: Biocuration 2010, Tokyo, Japan, 11 October 2010 - 14 October 2010. (2010) BASE Show details 6 A framework for constituent-dependency conversion Marek, T; Schneider, G; Volk, Martin In: Marek, T; Schneider, G; Volk, Martin (2009). A framework for constituent-dependency conversion. In: 8th Conference on Treebanks and Linguistic Theories, Milano, 2009 - 2009. (2009) BASE Show details 7 Using existing biomedical resources to detect and ground terms in biomedical literature Kaljurand, K; Rinaldi, Fabio; Kappeler, T; Schneider, G In: Kaljurand, K; Rinaldi, Fabio; Kappeler, T; Schneider, G (2009). Using existing biomedical resources to detect and ground terms in biomedical literature. In: Combi, C; Shahar, Y; Abu-Hanna, A. Artificial Intelligence in Medicine: 12th Conference on Artificial Intelligence in Medicine, AIME 2009, Verona, Italy, July 18-22, 2009. Proceedings. Berlin: Springer, 225-234. (2009) Abstract: We present an approach towards the automatic detection of names of proteins, genes, species, etc. in biomedical literature and their grounding to widely accepted identifiers. The annotation is based on a large term list that contains the common expression of the terms, a normalization step that matches the terms with their actual representation in the texts, and a disambiguation step that resolves the ambiguity of matched terms. We describe various characteristics of the terms found in existing term resources and of the terms that are used in biomedical texts. We evaluate our results against a corpus of manually annotated protein mentions and achieve a precision of 57% and recall of 72%. Keyword: 000 Computer science; 410 Linguistics; Institute of Computational Linguistics; IntAct; knowledge & systems; MINT; named-entity recognition; NLP; term grounding URL: https://doi.org/10.1007/978-3-642-02976-9_32 https://www.zora.uzh.ch/id/eprint/24661/ https://doi.org/10.5167/uzh-24661 https://www.zora.uzh.ch/id/eprint/24661/1/Pub_aime09.pdf BASE Hide details 8 Effective Mining of Protein Interactions Rinaldi, Fabio; Schneider, G; Kaljurand, K... In: Rinaldi, Fabio; Schneider, G; Kaljurand, K; Clematide, S (2009). Effective Mining of Protein Interactions. In: Third international symposium on languages in biology and medecine (LBM 2009), Jeju Island, South Korea, 8 November 2009 - 10 November 2009, 115-118. (2009) BASE Show details 9 Detecting and grounding terms in biomedical literature Kaljurand, K; Rinaldi, Fabio; Kappeler, T... In: Kaljurand, K; Rinaldi, Fabio; Kappeler, T; Schneider, G (2009). Detecting and grounding terms in biomedical literature. Advances in Computational Linguistics, 41:15-26. (2009) BASE Show details 10 OntoGene in BioCreative II Hess, M; Schneider, G; Parisot, P... In: Rinaldi, Fabio; Kappeler, T; Kaljurand, K; Schneider, G; Klenner, M; Clematide, S; Hess, M; von Allmen, J M; Parisot, P; Romacker, M; Vachon, T (2008). OntoGene in BioCreative II. Genome Biology, 9(Suppl 2):S13. (2008) BASE Show details 11 Tools for detection of protein interactions in biomedical literature Rinaldi, Fabio; Schneider, G; Kaljurand, K In: Rinaldi, Fabio; Schneider, G; Kaljurand, K (2008). Tools for detection of protein interactions in biomedical literature. In: Genomes to Systems Conference 2008, Manchester, UK, 17 March 2008 - 19 March 2008. (2008) BASE Show details 12 Extended discourse representation structures in attempto controlled English Fuchs, N E; Hoefler, S; Kaljurand, K... In: Fuchs, N E; Hoefler, S; Kaljurand, K; Kuhn, T; Schneider, G; Schwertel, U (2006). Extended discourse representation structures in attempto controlled English. ifi Technical Reports ifi2006.07, University of Zurich. (2006) BASE Show details 13 An environment for relation mining over richly annotated corpora: the case of GENIA Rinaldi, Fabio; Schneider, G; Kaljurand, K... In: Rinaldi, Fabio; Schneider, G; Kaljurand, K; Hess, M; Romacker, M (2006). An environment for relation mining over richly annotated corpora: the case of GENIA. BMC Bioinformatics, 7(Suppl 3):S3. (2006) BASE Show details 14 Discourse representation structures for ACE 5 Fuchs, N E; Hoefler, S; Kaljurand, K... In: Fuchs, N E; Hoefler, S; Kaljurand, K; Kuhn, T; Schneider, G; Schwertel, U (2006). Discourse representation structures for ACE 5. ifi Technical Reports ifi2006.10, University of Zurich. (2006) BASE Show details 15 Extended discourse representation structures in attempto controlled English Schwertel, U; Hoefler, S; Schneider, G... In: Fuchs, N E; Hoefler, S; Kaljurand, K; Schneider, G; Schwertel, U (2005). Extended discourse representation structures in attempto controlled English. ifi Technical Reports ifi-2005.8, University of Zurich. (2005) BASE Show details 16 Exploiting technical terminology for knowledge management Rinaldi, Fabio; Yuste, E; Schneider, G... In: Rinaldi, Fabio; Yuste, E; Schneider, G; Hess, M; Roussel, D (2005). Exploiting technical terminology for knowledge management. In: Ontology Learning from Text: Methods, Evaluation and Applications, Amsterdam: IOS Press (Frontiers in artificial intelligence and applications, edited by J. Breuker et al., volume 123), 2005 - 2005, 140-154. (2005) BASE Show details 17 Mining relations in the GENIA corpus Rinaldi, Fabio; Schneider, G; Kaljurand, K... In: Rinaldi, Fabio; Schneider, G; Kaljurand, K; Dowdall, J; Andronis, C; Persidis, A; Konstanti, O (2004). Mining relations in the GENIA corpus. In: Second European Workshop on Data Mining and Text Mining for Bioinformatics, Pisa, Italy, September 2004 - September 2004, 61-68. (2004) BASE Show details 18 Terminology expansion and relation identification between genes and pathways Dowdall, J; Rinaldi, Fabio; Persidis, A... In: Dowdall, J; Rinaldi, Fabio; Persidis, A; Kaljurand, K; Schneider, G; Hess, M (2004). Terminology expansion and relation identification between genes and pathways. In: Workshop on Terminology, Ontology and Knowledge Representation, Universit Jean Moulin (Lyon 3), January 2004 - January 2004, 61-68. (2004) BASE Show details 19 Answering questions in the genomics domain Rinaldi, Fabio; Dowdall, J; Schneider, G In: Rinaldi, Fabio; Dowdall, J; Schneider, G (2004). Answering questions in the genomics domain. In: ACL-2004 workshop on Question Answering in Restricted Domains, Barcelona, Spain., July 2004 - July 2004, 46-53. (2004) BASE Show details 20 Combining shallow and deep processing for a robust, fast, deep-linguistic dependency parser Schneider, G In: Schneider, G (2004). Combining shallow and deep processing for a robust, fast, deep-linguistic dependency parser. In: European Summer School in Logic, Language and Information ESSLLI 2004, Nancy, France, 2004 - 2004, 41-50. (2004) BASE Show details Page: 1 2

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