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    • Bioschemas (2)
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    • Garcia, Alexander (2)
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All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year AND OR AND NOT All fields Title Creator / Publisher Keyword Year Sort by creator [A → Z]' creator [Z → A]' publishing year ↑ (asc)' publishing year ↓ (desc)' title [A → Z]' title [Z → A]' Simple Search Hits 1 – 2 of 2 1 Biotea-2-Bioschemas test data ... Garcia, Leyla; Giraldo, Olga; Garcia, Alexander. - : Zenodo, 2019 BASE Show details 2 Biotea-2-Bioschemas test data ... Garcia, Leyla; Giraldo, Olga; Garcia, Alexander; Rebholz-Schuhmann, Dietrich. - : Zenodo, 2019 Abstract: Biotea-2-Bioschemas mapps Biotea model to schema.org following the approach proposed by Bioschemas. Here we present the test data used in Biotea GitHub pages, corresponding to 2596 PubMed Open Access (PMC-OA) subset publications together with the software used to render schema.org markup. Date deposited includes (i) publications retrieved from PMC-OA API, i.e., full text in JATS/XML, (ii) ontology terms recognized in the abstracts and obtained from the NCBO Annotator, i.e., semantic annotations, and (iii) the same annotations following the PubAnnotation format. Software deposited includes (i) biotea-bioschemas-metadata which parses JATS/XML files and creates Bioschemas markup including metadata, abstract and references, (ii) biotea-bioschemas-annotations which parses PubAnnotation annotations and creates Bioschemas markup, and (iii) biotea-bioschemas-showcase which uses the other two in order to display markup in a graphical basic way and render it as a script element in the HTML following the JSON-LD ... : {"references": ["Gray AJG, Goble CA, Jim\u00e9nez R. Bioschemas: From Potato Salad to Protein Annotation. International Semantic Web Conference. 2017; Available: https://pdfs.semanticscholar.org/74ec/a9c89622bff731b21b03acb4f2400a0f00fa.pdf", "Garcia Castro LJ, McLaughlin C, Garcia A. Biotea: RDFizing PubMed Central in support for the paper as an interface to the Web of Data. J Biomed Semantics. BioMed Central; 2013;4: S5.", "Garcia A, Lopez F, Garcia L, Giraldo O, Bucheli V, Dumontier M. Biotea: semantics for Pubmed Central. PeerJ. PeerJ Inc.; 2018;6: e4201.", "Jonquet C, Shah NH, Youn CH, Musen MA, Storey M-A. NCBO Annotator: Semantic Annotation of Biomedical Data. Proceedings of the 2009 International Semantic Web Conference. 2009. Available:", "Kim J-D, Wang Y. PubAnnotation: a persistent and shareable corpus and annotation repository. Proceedings of the 2012 Workshop on Biomedical Natural Language Processing. Association for Computational Linguistics; 2012. pp. 202\u2013205."]} ... Keyword: Bioschemas; Biotea; Full text publications; Semantic annotations; Web pages markup URL: https://zenodo.org/record/2595280 https://dx.doi.org/10.5281/zenodo.2595280 BASE Hide details

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