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1
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text
In: Krallinger, M; Vazquez, M; Leitner, F; Salgado, D; Chatr-aryamontri, A; Winter, A; Perfetto, L; Briganti, L; Licata, L; Iannuccelli, M; Castagnoli, L; Cesareni, G; Tyers, M; Schneider, G; Rinaldi, Fabio; Leaman, R; Gonzalez, G; Matos, S; Kim, S; Wilbur, W J; Rocha, L; Shatkay, H; Tendulkar, A V; Agarwal, S; Liu, F; Wang, X; Rak, R; Noto, K; Elkan, C; Lu, Z (2011). The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. BMC Bioinformatics, 12(Suppl 8):S3. (2011)
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2
Mining complex Drug/Gene/Disease relations
In: Rinaldi, Fabio; Schneider, G; Clematide, S (2011). Mining complex Drug/Gene/Disease relations. In: Pacific Symposium on Biocomputing Workshop "Mining the Pharmacogenomics Literature", Hawaii, 3 January 2011 - 7 January 2011. (2011)
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3
OntoGene at CALBC II and Some Thoughts on the Need of Document-Wide Harmonization
In: Clematide, S; Rinaldi, Fabio; Schneider, G (2011). OntoGene at CALBC II and Some Thoughts on the Need of Document-Wide Harmonization. In: Second CALBC Workshop, Hinxton, Cambridgeshire, UK, 16 March 2011 - 18 March 2011, 48-51. (2011)
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4
ODIN: an advanced interface for the curation of biomedical literature
In: Rinaldi, Fabio; Clematide, S; Schneider, G; Romacker, M; Vachon, Th (2010). ODIN: an advanced interface for the curation of biomedical literature. In: Biocuration 2010, Tokyo, Japan, 11 October 2010 - 14 October 2010. (2010)
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5
Using existing biomedical resources to detect and ground terms in biomedical literature
In: Kaljurand, K; Rinaldi, Fabio; Kappeler, T; Schneider, G (2009). Using existing biomedical resources to detect and ground terms in biomedical literature. In: Combi, C; Shahar, Y; Abu-Hanna, A. Artificial Intelligence in Medicine: 12th Conference on Artificial Intelligence in Medicine, AIME 2009, Verona, Italy, July 18-22, 2009. Proceedings. Berlin: Springer, 225-234. (2009)
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6
Effective Mining of Protein Interactions
In: Rinaldi, Fabio; Schneider, G; Kaljurand, K; Clematide, S (2009). Effective Mining of Protein Interactions. In: Third international symposium on languages in biology and medecine (LBM 2009), Jeju Island, South Korea, 8 November 2009 - 10 November 2009, 115-118. (2009)
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7
Detecting and grounding terms in biomedical literature
In: Kaljurand, K; Rinaldi, Fabio; Kappeler, T; Schneider, G (2009). Detecting and grounding terms in biomedical literature. Advances in Computational Linguistics, 41:15-26. (2009)
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8
OntoGene in BioCreative II
In: Rinaldi, Fabio; Kappeler, T; Kaljurand, K; Schneider, G; Klenner, M; Clematide, S; Hess, M; von Allmen, J M; Parisot, P; Romacker, M; Vachon, T (2008). OntoGene in BioCreative II. Genome Biology, 9(Suppl 2):S13. (2008)
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9
Tools for detection of protein interactions in biomedical literature
In: Rinaldi, Fabio; Schneider, G; Kaljurand, K (2008). Tools for detection of protein interactions in biomedical literature. In: Genomes to Systems Conference 2008, Manchester, UK, 17 March 2008 - 19 March 2008. (2008)
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10
An environment for relation mining over richly annotated corpora: the case of GENIA
In: Rinaldi, Fabio; Schneider, G; Kaljurand, K; Hess, M; Romacker, M (2006). An environment for relation mining over richly annotated corpora: the case of GENIA. BMC Bioinformatics, 7(Suppl 3):S3. (2006)
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11
Exploiting technical terminology for knowledge management
In: Rinaldi, Fabio; Yuste, E; Schneider, G; Hess, M; Roussel, D (2005). Exploiting technical terminology for knowledge management. In: Ontology Learning from Text: Methods, Evaluation and Applications, Amsterdam: IOS Press (Frontiers in artificial intelligence and applications, edited by J. Breuker et al., volume 123), 2005 - 2005, 140-154. (2005)
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12
Mining relations in the GENIA corpus
In: Rinaldi, Fabio; Schneider, G; Kaljurand, K; Dowdall, J; Andronis, C; Persidis, A; Konstanti, O (2004). Mining relations in the GENIA corpus. In: Second European Workshop on Data Mining and Text Mining for Bioinformatics, Pisa, Italy, September 2004 - September 2004, 61-68. (2004)
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13
Terminology expansion and relation identification between genes and pathways
In: Dowdall, J; Rinaldi, Fabio; Persidis, A; Kaljurand, K; Schneider, G; Hess, M (2004). Terminology expansion and relation identification between genes and pathways. In: Workshop on Terminology, Ontology and Knowledge Representation, Universit Jean Moulin (Lyon 3), January 2004 - January 2004, 61-68. (2004)
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14
Answering questions in the genomics domain
In: Rinaldi, Fabio; Dowdall, J; Schneider, G (2004). Answering questions in the genomics domain. In: ACL-2004 workshop on Question Answering in Restricted Domains, Barcelona, Spain., July 2004 - July 2004, 46-53. (2004)
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15
Steps towards a GENIA dependency treebank
In: Schneider, G; Rinaldi, Fabio; Kaljurand, K; Hess, M (2004). Steps towards a GENIA dependency treebank. In: Third Workshop on Treebanks and Linguistic Theories (TLT) 2004, Tübingen, Germany, 2004 - 2004, 137-149. (2004)
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16
A robust and hybrid deep-linguistic theory applied to large scale parsing
In: Schneider, G; Rinaldi, Fabio; Dowdall, J (2004). A robust and hybrid deep-linguistic theory applied to large scale parsing. In: COLING-2004 Robust Methods in Analysis of Natural language Data, Geneva, Switzerland, August 2004 - August 2004, 14-23. (2004)
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