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A French clinical corpus with comprehensive semantic annotations: development of the Medical Entity and Relation LIMSI annOtated Text corpus (MERLOT)
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In: ISSN: 1574-020X ; EISSN: 1574-0218 ; Language Resources and Evaluation ; https://hal.archives-ouvertes.fr/hal-01631743 ; Language Resources and Evaluation, Springer Verlag, 2017, 52 (2), pp.571-601. ⟨10.1007/s10579-017-9382-y⟩ (2017)
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Annotation Guidelines BIONLP-ST 2016 SeeDev task
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In: https://hal.inrae.fr/hal-02795594 ; 2016, pp.47 ; https://sites.google.com/site/bionlpst2016/tasks/seedev/AnnotationGuidelinesBIONLP-ST2016-SeeDevtask%285%29.pdf (2016)
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Shared Task SeeDev : Extraction de régulations impliquées dans le développement de la graine d’Arabidopsis thaliana à partir de publications scientifiques
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In: Les journées Bioinformatique de l'Inra ; https://hal.archives-ouvertes.fr/hal-01455855 ; Les journées Bioinformatique de l'Inra, Mar 2016, Montpellier, France. pp.1 (2016)
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Overview of the regulatory network of plant seed development (SeeDev) task at the BioNLP shared task 2016
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In: Proceedings of the 4th BioNLP Shared Task Workshop ; BioNLP Shared Task ; https://hal.archives-ouvertes.fr/hal-01455854 ; BioNLP Shared Task, Aug 2016, Berlin, Germany. pp.113 ; https://www.aclweb.org/anthology/W/W16/W16-3001.pdf (2016)
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Information extraction from articles for the elaboration of the regulatory networks involved in Arabidopsis seed development
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In: 26th International Conference on Arabidopsis Research ; https://hal.archives-ouvertes.fr/hal-01524850 ; 26th International Conference on Arabidopsis Research, Jul 2015, Paris, France (2015)
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Knowledge model of regulatory networks involved in Arabidopsis seed development for information extraction and integration from text
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In: BioCreative 5 ; https://hal.archives-ouvertes.fr/hal-01512197 ; BioCreative 5, Sep 2015, Madrid, Spain (2015)
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Automatic computation of CHA2DS2-VASc score: information extraction from clinical texts for thromboembolism risk assessment.
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In: AMIA . Annual Symposium proceedings [electronic resource] / AMIA Symposium. AMIA Symposium. ; https://hal.archives-ouvertes.fr/hal-00748588 ; AMIA . Annual Symposium proceedings [electronic resource] / AMIA Symposium. AMIA Symposium., 2011, 2011, pp.501-10 (2011)
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Abstract:
International audience ; The CHA2DS2-VASc score is a 10-point scale which allows cardiologists to easily identify potential stroke risk for patients with non-valvular fibrillation. In this article, we present a system based on natural language processing (lexicon and linguistic modules), including negation and speculation handling, which extracts medical concepts from French clinical records and uses them as criteria to compute the CHA2DS2-VASc score. We evaluate this system by comparing its computed criteria with those obtained by human reading of the same clinical texts, and by assessing the impact of the observed differences on the resulting CHA2DS2-VASc scores. Given 21 patient records, 168 instances of criteria were computed, with an accuracy of 97.6%, and the accuracy of the 21 CHA2DS2-VASc scores was 85.7%. All differences in scores trigger the same alert, which means that system performance on this test set yields similar results to human reading of the texts.
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Keyword:
[SDV.MHEP]Life Sciences [q-bio]/Human health and pathology
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URL: https://hal.archives-ouvertes.fr/hal-00748588
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Named and specific entity detection in varied data: the Quaero named entity baseline evaluation
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In: 7. Conference on international language resources and evaluation ; https://hal.inrae.fr/hal-02754184 ; 7. Conference on international language resources and evaluation, May 2010, Valletta, Malta ; http://www.lrec-conf.org/proceedings/lrec2010/index.html (2010)
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Named and specific entity detection in varied data: The Quaero Named Entity baseline evaluation
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In: Seventh International Language Resources and Evaluation (LREC'10) ; https://hal.archives-ouvertes.fr/hal-02496836 ; Seventh International Language Resources and Evaluation (LREC'10), 2010, La Valette, Malta (2010)
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Morphosemantic parsing of medical compound words: Transferring a French analyzer to English
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In: ISSN: 1386-5056 ; International Journal of Medical Informatics ; https://hal.archives-ouvertes.fr/hal-00413362 ; International Journal of Medical Informatics, Elsevier, 2009, 78 (1), pp.48-55 (2009)
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Analyse morphosémantique des composés savants : transposition du français à l'anglais
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In: TALN ; https://halshs.archives-ouvertes.fr/halshs-00157869 ; TALN, Jun 2007, Toulouse, France. pp.79-88 (2007)
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Defining Medical Words : Transposing Morphosemantic Analysis from French to English
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In: Proceedings of the 12th Medinfo Conference ; 12th International Conference MEDINFO ; https://halshs.archives-ouvertes.fr/halshs-00157857 ; 12th International Conference MEDINFO, Aug 2007, Brisbane, Australia. pp.535-539 (2007)
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